Hi!
My name is Amanda and I`ve read that changing modeller seed helps to achieve a better model. In my top file, where can I put the new comand? And how to write it? I know that the number must be negative. Sorry for the stupid question.
Thank you in advance!
Amanda Maia
INCLUDE # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1 # uncomment to produce a large log file
SET ALNFILE = 'novo_alinhamento.ali' # alignment filename
SET KNOWNS = '1MDY' '1NKP' '2QL2' '1HLO' # codes of the templates
SET SEQUENCE = 'twist1' # code of the target
SET STARTING_MODEL = 1
SET ENDING_MODEL = 100
CALL ROUTINE = 'model' # do homology modelling