Hello all, |
I´m a begginer user of MODELLER, and I have a question for you:
I´m making docking experiments, and the protein I have got from the PDB has some gaps, so the docking can´t go on. So, I thought I could model the protein using its own cristal as template. So I did, but the models I got don´t fit very well with the original cristal (when I superimpose them with MacPyMol, the models are very deviated from the cristal). What can I do to improve the adjustment between models and template?
Thanks for your attention.
Mª Victoria Ruiz Pérez
CIBER de Enfermedades Raras
Departamento de Biología Molecular y Bioquímica
Facultad de Ciencias, Universidad de Málaga
Campus de Teatinos, sn;
Tlf. 952 137135
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