Re: [modeller_usage] loop refining of a multi chain protein
To: subarna thakur <>
Subject: Re: [modeller_usage] loop refining of a multi chain protein
From: Modeller Caretaker <>
Date: Fri, 29 May 2009 06:49:33 -0700
Cc:
subarna thakur wrote:
> Thanks for suggestion ,it worked. After running the script two PDB files
> are generated one with extension .BL00010001 and other with .IL00000001
> extension.Which one should I select and on which basis?
See http://salilab.org/modeller/9v6/manual/node439.html
The generated loop models have the .BL extension. The .IL files are
initial loops, which are unoptimized - you don't want to select those.
Ben Webb, Modeller Caretaker
--
http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage