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Re: [modeller_usage] loop refining of a multi chain protein
- To: subarna thakur <>
- Subject: Re: [modeller_usage] loop refining of a multi chain protein
- From: Modeller Caretaker <>
- Date: Fri, 29 May 2009 06:49:33 -0700
subarna thakur wrote:
> Thanks for suggestion ,it worked. After running the script two PDB files
> are generated one with extension .BL00010001 and other with .IL00000001
> extension.Which one should I select and on which basis?
The generated loop models have the .BL extension. The .IL files are
initial loops, which are unoptimized - you don't want to select those.
Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage