[modeller_usage] the pdb template has a break in the chain
Subject: [modeller_usage] the pdb template has a break in the chain
From: Shawna Frazier <>
Date: Wed, 15 Jul 2009 16:00:22 -0700
I am having an issue where the pdb template contains a chain break but
the model I produce is not broken.
The pdb template I am using (2bg9.pdb) is already an oligomer with
subunit chains denoted by " / ", but each subunit chain is missing a
considerable stretch of sequence (the intracellular portion) so each
subunit chain is broken into two pieces in the structure. My resulting
model structure, however, is not broken.
Is there a way I can add a command to break the bond in my model?