Subject: Re: [modeller_usage] query about coil region!!
From: Modeller Caretaker <>
Date: Wed, 05 Aug 2009 15:13:52 -0700
Cc: Modeller Queries <>
Jacob Glanville wrote:
> There is a way to enforce coil formation: manually modify the reference
> alignment so that the query is not aligned to the reference in the area
> of interest. Why do you want to do this?
Apologies if I wasn't clear, but that's what I meant in my post - if
there is no aligned template, you will basically get coil. But it
doesn't *enforce* coil formation by any means - it will essentially try
to do protein folding on that region, which could potentially give you
any secondary structure type (it is simply that coil is the most likely
Ben Webb, Modeller Caretaker
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