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Re: [modeller_usage] building a model with zn ions

anu priya wrote:
My target protein has two zinc atoms. I aslo obtain the binding sites of these metals in my target sequence.
how do i incorporate these zn ions in to my modelled structure?
Is it appropriate to include zn ions after modelling or is it neccessary to include it before modelling? Also please give me a procedure to do this like example script files or alignment files or any alternative methods.

Did you look at the example at http://salilab.org/modeller/9v7/manual/node18.html ? It does essentially what you want to do (just with Fe-S clusters rather than Zn).

	Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage