Re: [modeller_usage] building a model with zn ions

[Modeller Caretaker <>]

anu priya wrote:
> My target protein has two zinc atoms. I aslo obtain the binding sites of 
> these metals in my target sequence.
> how do i incorporate these zn ions in to my modelled structure?
> Is it appropriate to include zn ions after modelling or is it neccessary 
> to include it before modelling?
> Also please give me a procedure to do this like example script files or 
> alignment files or any alternative methods.

Did you look at the example at 
http://salilab.org/modeller/9v7/manual/node18.html ? It does essentially 
what you want to do (just with Fe-S clusters rather than Zn).

	Ben Webb, Modeller Caretaker
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