[modeller_usage] Selection criteria for building sequence database - pdball.pir
To:
Subject: [modeller_usage] Selection criteria for building sequence database - pdball.pir
From: Praveen Raj <>
Date: Thu, 5 Nov 2009 16:16:23 +0530
Hi,
I'm trying to rebuild the pdball.pir file from a set of pdb files, using the model.make_chain() as mentioned in modeller website and I noticed certain filter criteria as parameters to make_chain() such as
And while processing I found that certain pdb files are skipped due to this filter criteria. My query is
1) Are these the standard criteria for building pir file? 2) Or adjusting the values to 0 (except min. res) will alter the purpose ?