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Hello Modeller. Having successfully install the newest version of Modeller
on my new machine (I ran some test cases), I would like to attempt the
construction of a mutant of my protein using the tutorial: http://salilab.org/modeller/wiki/Mutate%20model.
However, my protein has metal and DNA with it and, so, I am not sure how
Modeller will deal with this. Can you inform me? I am worried that Modeller
will simple fail with the error that it can not recognize certain atoms. If it
does, is there away I can get around this? Could I do only a local (around the
mutated site) minimization only, ignoring the rest of the protein? I tried to investigate this in the archives but didn’t
find it. Sorry if this is a repeat. Thanks ,Steve |