Hi; I am trying to run the following script :
# Homology modeling with multiple templates
from modeller import * # Load standard Modeller classes
from modeller..automodel import * # Load the automodel class
log.verbose() # request verbose output
env = environ() # create a new MODELLER environment to build this model in
# directories for input atom files
env.io.atom_files_directory = './:../atom_files'
a = automodel(env,
alnfile =
’align.ali’, # alignment filename
knowns = (’1bkn’, ’1b62’, ’1b63’, ’1nhh’, ’1nhi’, ’1nhj’), # codes of the templates
sequence = ’PAOI’) # code of the target
a.starting_model=
1 # index of the first model
a.ending_model = 50 # index of the last
model
# (determines how many models to calculate)
a.make() # do the
actual homology modeling
and I get the following error:
warning: Non-ASCII character '\xe2' in file model-multiple2.py on line
14, but no encoding declared; see
http://www.python.org/peps/pep-0263.html for details
File "model-multiple2.py", line 14
alnfile = ’align.ali’, # alignment filename
^
SyntaxError: invalid syntax
How do I fix my script?
Thanks, Virginia
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