On 3/12/10 5:51 AM, Baptiste Legrand wrote:
Is it possible to refine protein segments from a crystal structure using modeller as we can do for models (but in this case, without providing alignment and template files) ?
Certainly - Modeller simply takes a PDB file as input for loop refinement. This can be any PDB file - it doesn't have to be a Modeller model - it can be a crystal structure or model generated by another package.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage