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Re: [modeller_usage] unable to read structural information

On 08/29/2010 02:09 PM, meier@lmb.uni-muenchen.de wrote:

Hi all,
suppose I have the following simple "dummy" py-modeller script:

from modeller import *
from modeller.automodel import *
log.verbose()
env = environ()

env.io.atom_files_directory = '<path to pdb>' # containing d1f0la3.pdb
a = automodel(env,
                 alnfile = '<my_pir_file.pir>',    # alignment filename
                 knowns  = 'd1f0la3',      # codes of the templates
                 sequence ='d1f0la3')        # code of the target

Align codes (the thing after the >P1;) have to be unique. Change your 
alignment file and Python script accordingly (e.g. you can call the 
sequence d1f0la3-1 and the structure d1f01la3-2).

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
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