Re: [modeller_usage] R: modelling discarding part of a template

[Modeller Caretaker <>]

On 08/31/2010 08:25 AM, Thomas Evangelidis wrote:
> Is it algorithmically difficult to add a function that will select a
> range of residue in one template and Modeller will exclude them without
> touching the alignment? When having multiple templates and several
> unwanted regions this procedure becomes very tedious.

That is certainly a possibility for a future release. You can get 
something similar in the meantime by writing a simple Python script that 
reads in the model, makes a selection excluding the regions you don't 
like, then writes out the selection to a new PDB file which you then use 
for automodel.

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage