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[modeller_usage] Question about gap_penalties_1d and gap_penalties_2d

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Subject: [modeller_usage] Question about gap_penalties_1d and gap_penalties_2d
From: Knut J Bjuland <>
Date: Mon, 11 Oct 2010 19:46:26 +0200

I am writing a master thesis where I am describing how I aligned protein sequence with template sequence. I use Modellers Saling's align2d protocol. How should I described gap_penalties_1d and gap_penalties_2d and what is the difference between them.

Knut J

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