What is the length of the target protein, which you are calling a Difficult one.
Your aln file is not found. Attach your align2d.py or salign.py respectively, if you are using single or multiple templates for modeling. Also attach your target sequence target.seq file.
Good Luck,
Ashish
Ashish Runthala,
Lecturer, Structural Biology Cell,
Biological Sciences Group,
Birla Institute of Technology & Science, Pilani,
Rajasthan - 333031
From: ranu sharma <>
Subject: [modeller_usage] problem in doing difficuly modeling using
modeller 9v8
To:
Message-ID:
<AANLkTikhoQUvqSQA1GkKauo9=>
Content-Type: text/plain; charset="iso-8859-1"
Hello Sir/Madam,
Good Afternoon. I am facing problem while doing Difficult modelling for my
protein. It is showing the following error.
I am attaching the .aln file, my .pdb and model.py file for your reference.
Hope to get a reply from you soon.
Thanks & Regards.
*ERROR:*
C:\Program Files\Modeller9v8\examples\ranu_basic\C4H>mod9v8 model.py
'import site' failed; use -v for traceback
Traceback (most recent call last):
File "model.py", line 9, in ?
a.make()
File "C:\Program
Files\Modeller9v8\modlib\modeller\automodel\automodel.py", li
ne 98, in make
self.homcsr(exit_stage)
File "C:\Program
Files\Modeller9v8\modlib\modeller\automodel\automodel.py", li
ne 424, in homcsr
self.check_alignment(aln)
File "C:\Program
Files\Modeller9v8\modlib\modeller\automodel\automodel.py", li
ne 406, in check_alignment
aln.check()
File "C:\Program Files\Modeller9v8\modlib\modeller\alignment.py", line
200, in
check
self.check_structure_structure(io=io)
File "C:\Program Files\Modeller9v8\modlib\modeller\alignment.py", line
209, in
check_structure_structure
return f(self.modpt, io.modpt, self.env.libs.modpt, eqvdst)
_modeller.ModellerError: check_a_282E> Unable to read structural information
for
alignment sequence: 1 2fdvA This command requires structures.
--
Ranu Sharma
Msc Bioinformatics, Pune University
JRF, National Chemical Laboratory, Pune
--
Ranu Sharma
Msc Bioinformatics, Pune University
JRF, National Chemical Laboratory, Pune
--
Ranu Sharma
Msc Bioinformatics, Pune University
JRF, National Chemical Laboratory, Pune
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://salilab.org/archives/modeller_usage/attachments/20101226/b8814492/attachment.html
------------------------------
_______________________________________________
modeller_usage mailing list
https://salilab.org/mailman/listinfo/modeller_usage
End of modeller_usage Digest, Vol 9, Issue 130
**********************************************