Re: [modeller_usage] cyclic peptide modeling

[Modeller Caretaker <>]

On 1/5/11 7:43 PM,  wrote:
> I want to use modeller to model the cyclopeptide.
...
> TypeError: patch() got an unexpected keyword argument
> 'residue_ids'

The example you looked at must have been very old, and for Modeller 8; 
the syntax changed slightly for Modeller 9. Use the updated example in 
the Modeller wiki instead:
http://salilab.org/modeller/wiki/Cyclic%20protein

	Ben Webb, Modeller Caretaker
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