Modeller_Usage Mailing List (by date)

Thread Index

[modeller_usage] strategies for model refinement 2011/01/05
- From: Irene Newhouse <>
Re: [modeller_usage] strategies for model refinement 2011/01/05
- From: Thomas Evangelidis <>
[modeller_usage] cyclic peptide modeling 2011/01/05
- From: <>
Re: [modeller_usage] cyclic peptide modeling 2011/01/05
- From: Modeller Caretaker <>
Re: [modeller_usage] strategies for model refinement 2011/01/06
- From: Mensur Dlakic <>
Re: [modeller_usage] strategies for model refinement 2011/01/08
- From: Thomas Evangelidis <>
Re: [modeller_usage] strategies for model refinement 2011/01/08
- From: Thomas Evangelidis <>
Re: [modeller_usage] model refinement 2011/01/09
- From: Irene Newhouse <>
Re: [modeller_usage] strategies for model refinement 2011/01/10
- From: Mensur Dlakic <>
[modeller_usage] MD Simulation 2011/01/10
- From: asmat salim <>
[modeller_usage] Regarding Salign 2011/01/10
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Salign 2011/01/11
- From: Modeller Caretaker <>
Re: [modeller_usage] MD Simulation 2011/01/11
- From: Thomas Evangelidis <>
[modeller_usage] Loop Modeling 2011/01/11
- From: bharat lal <>
Re: [modeller_usage] Loop Modeling 2011/01/12
- From: Thomas Evangelidis <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 6 2011/01/12
- From: bharat lal <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 6 - Sequence difference between alignment and PDB 2011/01/13
- From: "Schmid, Ralf (Dr.)" <>
Re: [modeller_usage] Loop Modeling 2011/01/14
- From: Thomas Evangelidis <>
[modeller_usage] query 2011/01/17
- From: bharat lakhani <>
Re: [modeller_usage] query 2011/01/17
- From: Modeller Caretaker <>
[modeller_usage] Regarding Salign 2011/01/20
- From: Ashish Runthala <>
[modeller_usage] model_addrsr.py 2011/01/21
- From: Koushik A C <>
[modeller_usage] Problem modelling protein dimer close to DNA ... 2011/01/21
- From: Sergio Garay <>
Re: [modeller_usage] model_addrsr.py 2011/01/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding Salign 2011/01/21
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 9 2011/01/21
- From: Ashish Runthala <>
[modeller_usage] Problem for a protein model 2011/01/23
- From: Bishwajit Das <>
[modeller_usage] model_addrsr.py 2011/01/23
- From: Koushik A C <>
[modeller_usage] Loop Modeling 2011/01/24
- From: bharat lal <>
[modeller_usage] restraining secondary structure 2011/01/24
- From: bharat lal <>
[modeller_usage] error message while ploting DOPE score 2011/01/24
- From: hari krishna <>
Re: [modeller_usage] error message while ploting DOPE score 2011/01/24
- From: David Hall <>
[modeller_usage] BLK usage => mainy chains 2011/01/24
- From: Isaure Chauvot de Beauchene <>
Re: [modeller_usage] Problem modelling protein dimer close to DNA ... 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 9 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Problem for a protein model 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] model_addrsr.py 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] restraining secondary structure 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] BLK usage => mainy chains 2011/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop Modeling 2011/01/24
- From: Modeller Caretaker <>
[modeller_usage] Loop modeling while restraining the secondary structure 2011/01/24
- From: bharat lal <>
[modeller_usage] how satisfactory relative orientation of modeled domains can be achieved in two matches cases 2011/01/25
- From: Maria Persico <>
[modeller_usage] Problem applying helix restraints to a homodimer model .. 2011/01/25
- From: Sergio Garay <>
Re: [modeller_usage] Problem applying helix restraints to a homodimer model .. 2011/01/25
- From: Modeller Caretaker <>
Re: [modeller_usage] how satisfactory relative orientation of modeled domains can be achieved in two matches cases 2011/01/25
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop modeling while restraining the secondary structure 2011/01/25
- From: Modeller Caretaker <>
[modeller_usage] loop modeling parallel-queue 2011/01/26
- From: David Rodríguez <>
Re: [modeller_usage] loop modeling parallel-queue 2011/01/26
- From: Thomas Evangelidis <>
Re: [modeller_usage] loop modeling parallel-queue 2011/01/26
- From: Modeller Caretaker <>
Re: [modeller_usage] loop modeling parallel-queue 2011/01/26
- From: Modeller Caretaker <>
Re: [modeller_usage] loop modeling parallel-queue 2011/01/26
- From: Thomas Evangelidis <>
[modeller_usage] mercury ions ignored by model.write_data() 2011/01/26
- From: Yingjie Lin <>
Re: [modeller_usage] mercury ions ignored by model.write_data() 2011/01/26
- From: Modeller Caretaker <>
[modeller_usage] Loop modeling 2011/01/27
- From: bharat lal <>
Re: [modeller_usage] Loop modeling 2011/01/27
- From: Modeller Caretaker <>
[modeller_usage] Differences using Xeon vs Opteron systems 2011/01/27
- From: Robert Healey <>
Re: [modeller_usage] Differences using Xeon vs Opteron systems 2011/01/27
- From: Modeller Caretaker <>
[modeller_usage] loop error 2011/01/29
- From: albert <>
[modeller_usage] Fw:loop error 2011/01/29
- From: albert <>
Re: [modeller_usage] loop error 2011/01/31
- From: Modeller Caretaker <>
[modeller_usage] Regarding Salign 2011/02/01
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Salign 2011/02/01
- From: Modeller Caretaker <>
[modeller_usage] amino acids in the favoured region 2011/02/02
- From: sankari thirumal <>
Re: [modeller_usage] amino acids in the favoured region 2011/02/04
- From: Modeller Caretaker <>
[modeller_usage] symmetry restrain 2011/02/04
- From: flavio seixas <>
[modeller_usage] Syntax of Restraints Commands 2011/02/04
- From: Seth Tanner <>
Re: [modeller_usage] symmetry restrain 2011/02/04
- From: Modeller Caretaker <>
Re: [modeller_usage] Syntax of Restraints Commands 2011/02/04
- From: Modeller Caretaker <>
Re: [modeller_usage] symmetry restrain 2011/02/05
- From: flavio seixas <>
[modeller_usage] HETATM reading 2011/02/06
- From: Seth Tanner <>
[modeller_usage] GETF, IUPAC_M and IATMCLS errors 2011/02/06
- From: Seth Tanner <>
[modeller_usage] How to make Modeller run Iteratively 2011/02/06
- From: Ashish Runthala <>
[modeller_usage] how to include a pepetide during homology modelling? 2011/02/07
- From: albert <>
Re: [modeller_usage] HETATM reading 2011/02/07
- From: Modeller Caretaker <>
Re: [modeller_usage] GETF, IUPAC_M and IATMCLS errors 2011/02/07
- From: Modeller Caretaker <>
Re: [modeller_usage] symmetry restrain 2011/02/07
- From: Modeller Caretaker <>
Re: [modeller_usage] how to include a pepetide during homology modelling? 2011/02/07
- From: Modeller Caretaker <>
Re: [modeller_usage] How to make Modeller run Iteratively 2011/02/07
- From: Modeller Caretaker <>
[modeller_usage] Retrieving full sequence from PDB file 2011/02/07
- From: sneha bairy <>
Re: [modeller_usage] Retrieving full sequence from PDB file 2011/02/07
- From: Modeller Caretaker <>
[modeller_usage] assess multiple chain modelling 2011/02/09
- From: Dimitri Gilis <>
Re: [modeller_usage] assess multiple chain modelling 2011/02/10
- From: Modeller Caretaker <>
Re: [modeller_usage] Retrieving full sequence from PDB file 2011/02/10
- From:
[modeller_usage] align_codes problem 2011/02/11
- From: Tuğba Küçükkal <>
Re: [modeller_usage] align_codes problem 2011/02/11
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeling domain within a domain 2011/02/11
- From: bharat lal <>
Re: [modeller_usage] Differences using Xeon vs Opteron systems 2011/02/14
- From: Robert Healey <>
[modeller_usage] how to run modeller at different seeds? 2011/02/15
- From: albert <>
Re: [modeller_usage] how to run modeller at different seeds? 2011/02/15
- From: Modeller Caretaker <>
Re: [modeller_usage] Differences using Xeon vs Opteron systems 2011/02/15
- From: Modeller Caretaker <>
[modeller_usage] Modeling circular permutation 2011/02/16
- From: bharat lal <>
Re: [modeller_usage] Modeling circular permutation 2011/02/16
- From: Modeller Caretaker <>
[modeller_usage] initial model error 2011/02/16
- From: albert <>
Re: [modeller_usage] initial model error 2011/02/16
- From: Modeller Caretaker <>
[modeller_usage] mutiple CPU error 2011/02/16
- From: albert <>
Re: [modeller_usage] mutiple CPU error 2011/02/16
- From: Modeller Caretaker <>
[modeller_usage] Protein - DNA Modelling 2011/02/16
- From: Koushik A C <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 33 2011/02/17
- From: Ashish Runthala <>
[modeller_usage] modeller and win64 2011/02/17
- From: Igor Dvortsov <>
Re: [modeller_usage] Protein - DNA Modelling 2011/02/17
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller and win64 2011/02/17
- From: Modeller Caretaker <>
[modeller_usage] plot_profiles.py errors 2011/02/18
- From: hari krishna <>
Re: [modeller_usage] plot_profiles.py errors 2011/02/18
- From: Modeller Caretaker <>
[modeller_usage] how seed influence the Modeller results? 2011/02/18
- From: albert <>
Re: [modeller_usage] how seed influence the Modeller results? 2011/02/18
- From: Modeller Caretaker <>
[modeller_usage] loop model error 2011/02/18
- From: albert <>
Re: [modeller_usage] loop model error 2011/02/18
- From: Modeller Caretaker <>
[modeller_usage] bad occupancy from loop refinement 2011/02/21
- From: albert <>
Re: [modeller_usage] bad occupancy from loop refinement 2011/02/22
- From: Modeller Caretaker <>
[modeller_usage] Regarding Iterative Sequence Alignment 2011/02/23
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Iterative Sequence Alignment 2011/02/24
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 37 2011/02/24
- From: Ashish Runthala <>
[modeller_usage] Structural alignment using iterative_structural_alignment 2011/02/25
- From: Seungyeul Yoo <>
Re: [modeller_usage] Structural alignment using iterative_structural_alignment 2011/02/25
- From: Modeller Caretaker <>
[modeller_usage] about model rank 2011/02/27
- From: albert <>
[modeller_usage] Regarding Salign 2011/02/28
- From: Ashish Runthala <>
Re: [modeller_usage] about model rank 2011/02/28
- From: Knut J Bjuland <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 39 2011/03/01
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 39 2011/03/01
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 39 2011/03/01
- From: Ashish Runthala <>
[modeller_usage] No template... 2011/03/01
- From: Marco Sette <>
Re: [modeller_usage] about model rank 2011/03/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding Salign 2011/03/01
- From: Modeller Caretaker <>
Re: [modeller_usage] No template... 2011/03/01
- From: Modeller Caretaker <>
[modeller_usage] No template... 2011/03/01
- From: Anna Marabotti <>
Re: [modeller_usage] how to rank model if log file missing 2011/03/01
- From: albert <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 41 2011/03/02
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 41 2011/03/02
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 42 2011/03/02
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 42 2011/03/02
- From: Ashish Runthala <>
Re: [modeller_usage] how to rank model if log file missing 2011/03/02
- From: Modeller Caretaker <>
[modeller_usage] about random seeds 2011/03/06
- From: albert <>
Re: [modeller_usage] about random seeds 2011/03/06
- From: Modeller Caretaker <>
[modeller_usage] problem of build_profile 2011/03/07
- From: Bishwajit Das <>
Re: [modeller_usage] problem of build_profile 2011/03/07
- From: Modeller Caretaker <>
[modeller_usage] Beta strand 2011/03/09
- From: Claudia Scotti <>
Re: [modeller_usage] Beta strand 2011/03/09
- From: Thomas Evangelidis <>
Re: [modeller_usage] Beta strand 2011/03/09
- From: Thomas Evangelidis <>
[modeller_usage] licence key for using modellar 2011/03/10
- From: "An@mIk@ SiNgH" <>
[modeller_usage] NaN error model generation Lennard-Jones restraints 2011/03/11
- From: David Rodríguez <>
Re: [modeller_usage] licence key for using modellar 2011/03/15
- From: Modeller Caretaker <>
[modeller_usage] E-values for profile building 2011/03/15
- From: Lilit Nersisyan <>
[modeller_usage] Modeller and Fedora 14 / python 2.7 2011/03/17
- From: Susan Hutchinson <>
Re: [modeller_usage] Modeller and Fedora 14 / python 2.7 2011/03/17
- From: Modeller Caretaker <>
[modeller_usage] Fedora 14 and Modeller 2011/03/18
- From: flavio seixas <>
Re: [modeller_usage] Fedora 14 and Modeller 2011/03/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller and Fedora 14 / python 2.7 2011/03/18
- From: Knut J Bjuland <>
Re: [modeller_usage] Modeller and Fedora 14 / python 2.7 2011/03/18
- From: Modeller Caretaker <>
Re: [modeller_usage] E-values for profile building 2011/03/18
- From: Modeller Caretaker <>
Re: [modeller_usage] NaN error model generation Lennard-Jones restraints 2011/03/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller and Fedora 14 / python 2.7 2011/03/21
- From: Susan Hutchinson <>
[modeller_usage] modelling from 2 templates, one for major part of sequence, 1 for insertion region 2011/03/21
- From: Irene Newhouse <>
Re: [modeller_usage] modelling from 2 templates, one for major part of sequence, 1 for insertion region 2011/03/21
- From: Modeller Caretaker <>
[modeller_usage] Sidechains Refinement and Symmetry definition 2011/03/22
- From: Giampaolo <>
[modeller_usage] Secondary structure restraints 2011/03/24
- From: Lilit Nersisyan <>
[modeller_usage] How to get Secondary Structure in Alignment file 2011/03/24
- From: Ashish Runthala <>
Re: [modeller_usage] How to get Secondary Structure in Alignment file 2011/03/25
- From: Thomas Evangelidis <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 55 2011/03/25
- From: Ashish Runthala <>
Re: [modeller_usage] How to get Secondary Structure in Alignment file 2011/03/26
- From: Thomas Evangelidis <>
Re: [modeller_usage] How to get Secondary Structure in Alignment file 2011/03/28
- From: Thomas Evangelidis <>
Re: [modeller_usage] Sidechains Refinement and Symmetry definition 2011/03/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Secondary structure restraints 2011/03/28
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 57 2011/03/29
- From: Ashish Runthala <>
[modeller_usage] unsubscribing 2011/03/31
- From: Bo Yang <>
[modeller_usage] salign: specify chains to superpose 2011/03/31
- From: Yingjie Lin <>
[modeller_usage] salign: specify chains to superpose 2011/03/31
- From: Yingjie Lin <>
[modeller_usage] Are gap in target and template same. 2011/03/31
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 59 2011/04/01
- From: Ashish Runthala <>
Re: [modeller_usage] Are gap in target and template same. 2011/04/01
- From: Modeller Caretaker <>
Re: [modeller_usage] salign: specify chains to superpose 2011/04/01
- From: Modeller Caretaker <>
[modeller_usage] Modeller 9.9 release 2011/04/04
- From: Modeller Caretaker <>
[modeller_usage] modelling a protein withtow chains 2011/04/04
- From: Houcemeddine Othman <>
Re: [modeller_usage] modelling a protein withtow chains 2011/04/04
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 61 2011/04/04
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 61 2011/04/04
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 62 2011/04/04
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 62 2011/04/05
- From: Modeller Caretaker <>
Re: [modeller_usage] How to get Secondary Structure in Alignment file 2011/04/06
- From: Thomas Evangelidis <>
[modeller_usage] IS SCWRL4 helpful for Models 2011/04/06
- From: Ashish Runthala <>
Re: [modeller_usage] IS SCWRL4 helpful for Models 2011/04/07
- From: Thomas Evangelidis <>
[modeller_usage] can salign output a "structural mapping" of residues 2011/04/07
- From: Benjamin SCHWARZ <>
[modeller_usage] salign multiple structures, with an initial multiple sequence alignment 2011/04/07
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] can salign output a "structural mapping" of residues 2011/04/07
- From: Modeller Caretaker <>
Re: [modeller_usage] salign multiple structures, with an initial multiple sequence alignment 2011/04/07
- From: Modeller Caretaker <>
Re: [modeller_usage] can salign output a "structural mapping" of residues 2011/04/08
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] salign multiple structures, with an initial multiple sequence alignment 2011/04/08
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] salign multiple structures, with an initial multiple sequence alignment 2011/04/08
- From: Modeller Caretaker <>
[modeller_usage] MSE query 2011/04/08
- From:
Re: [modeller_usage] MSE query 2011/04/09
- From: Modeller Caretaker <>
[modeller_usage] How Alignment Score is calculated. 2011/04/09
- From: Ashish Runthala <>
[modeller_usage] homodimer problem 2011/04/10
- From:
Re: [modeller_usage] homodimer problem 2011/04/11
- From: Modeller Caretaker <>
Re: [modeller_usage] How Alignment Score is calculated. 2011/04/11
- From: Modeller Caretaker <>
[modeller_usage] modifiable version of salign.iterative_structural_align() 2011/04/12
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] modifiable version of salign.iterative_structural_align() 2011/04/12
- From: Modeller Caretaker <>
[modeller_usage] Modelling a protein loop close to DNA ..... 2011/04/13
- From: Sergio Garay <>
Re: [modeller_usage] Modelling a protein loop close to DNA ..... 2011/04/13
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 69 2011/04/14
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 69 2011/04/14
- From: Ashish Runthala <>
[modeller_usage] (no subject) 2011/04/14
- From:
Re: [modeller_usage] (no subject) 2011/04/14
- From: Modeller Caretaker <>
Re: [modeller_usage] Long loop modeling 2011/04/15
- From: bharat lal <>
[modeller_usage] restrict salign to subparts of some structures sequences 2011/04/18
- From: Benjamin SCHWARZ <>
[modeller_usage] How to run flexEM package parallel 2011/04/19
- From:
[modeller_usage] (no subject) 2011/04/20
- From:
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 73 2011/04/20
- From: Ashish Runthala <>
Re: [modeller_usage] Long loop modeling 2011/04/20
- From: Modeller Caretaker <>
Re: [modeller_usage] restrict salign to subparts of some structures sequences 2011/04/20
- From: Modeller Caretaker <>
Re: [modeller_usage] How to run flexEM package parallel 2011/04/20
- From: Modeller Caretaker <>
[modeller_usage] reading MRC origin coordinates in modeller and FLEX-EM 2011/04/20
- From: dmitry lyumkis <>
[modeller_usage] Regarding alignment 2011/04/21
- From: Ashish Runthala <>
Re: [modeller_usage] reading MRC origin coordinates in modeller and FLEX-EM 2011/04/21
- From: Modeller Caretaker <>
[modeller_usage] optimization script 2011/04/22
- From:
Re: [modeller_usage] optimization script 2011/04/22
- From: Modeller Caretaker <>
[modeller_usage] Regarding Salign Alignment 2011/04/25
- From: Ashish Runthala <>
[modeller_usage] modelling coordinate of missing residues 2011/04/25
- From: "Sangita Kachhap" <>
[modeller_usage] one question about merging two proteins into one 2011/04/26
- From: zhangliqun <>
Re: [modeller_usage] modelling coordinate of missing residues 2011/04/26
- From: Modeller Caretaker <>
Re: [modeller_usage] one question about merging two proteins into one 2011/04/26
- From: Modeller Caretaker <>
[modeller_usage] Downloads in an Intel core i7 system 2011/04/27
- From: davidmanas <>
Re: [modeller_usage] Downloads in an Intel core i7 system 2011/04/27
- From: Modeller Caretaker <>
Re: [modeller_usage] Downloads in an Intel core i7 system 2011/04/27
- From: Esben Jannik Bjerrum <>
Re: [modeller_usage] Downloads in an Intel core i7 system 2011/04/27
- From: Modeller Caretaker <>
[modeller_usage] B value 2011/04/28
- From: Sanger <>
[modeller_usage] error in using a simulated structure as template. 2011/04/28
- From: Bala subramanian <>
Re: [modeller_usage] error in using a simulated structure as template. 2011/04/28
- From: Modeller Caretaker <>
Re: [modeller_usage] B value 2011/04/28
- From: Modeller Caretaker <>
[modeller_usage] High energy in template-based parts of the model 2011/05/02
- From: Lilit Nersisyan <>
[modeller_usage] batch model building 2011/05/02
- From: Vagmita Pabuwal <>
Re: [modeller_usage] batch model building 2011/05/02
- From: Modeller Caretaker <>
Re: [modeller_usage] High energy in template-based parts of the model 2011/05/02
- From: Modeller Caretaker <>
[modeller_usage] Need help regarding alteration of align2d.py parameters 2011/05/02
- From: Ashish Runthala <>
[modeller_usage] FATAL ERROR: MODINSTALL9v9 environment variable not set: incomplete MODELLER installation on Ubuntu 10.4 2011/05/10
- From: crina ionescu <>
Re: [modeller_usage] FATAL ERROR: MODINSTALL9v9 environment variable not set: incomplete MODELLER installation on Ubuntu 10.4 2011/05/10
- From: Modeller Caretaker <>
Re: [modeller_usage] Problem in mGeneThreader link 2011/05/16
- From: Bishwajit Das <>
Re: [modeller_usage] Problem in mGeneThreader link 2011/05/16
- From: Modeller Caretaker <>
[modeller_usage] align-template.py command erorr 2011/05/17
- From: Sajad Ahrari <>
[modeller_usage] retrieve fitted models after iterative_structural_align() 2011/05/18
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] align-template.py command erorr 2011/05/18
- From: Modeller Caretaker <>
Re: [modeller_usage] retrieve fitted models after iterative_structural_align() 2011/05/18
- From: Modeller Caretaker <>
[modeller_usage] [Peptide Refinement] How to move R groups only? 2011/05/20
- From: Ignacio Ibarra <>
[modeller_usage] Multi-model PDB file 2011/05/23
- From: Thomas Holder <>
Re: [modeller_usage] Multi-model PDB file 2011/05/23
- From: Rodrigo Faccioli <>
Re: [modeller_usage] Multi-model PDB file 2011/05/23
- From: Modeller Caretaker <>
Re: [modeller_usage] [Peptide Refinement] How to move R groups only? 2011/05/23
- From: Modeller Caretaker <>
[modeller_usage] Loop modelling without changing structure 2011/05/24
- From: Matthias Schmidt <>
Re: [modeller_usage] Loop modelling without changing structure 2011/05/24
- From: Thomas Evangelidis <>
Re: [modeller_usage] Loop modelling without changing structure 2011/05/24
- From: Thomas Evangelidis <>
[modeller_usage] Regarding multiple calls of align2d.py 2011/05/24
- From: Ashish Runthala <>
Re: [modeller_usage] Loop modelling without changing structure 2011/05/24
- From: Thomas Evangelidis <>
Re: [modeller_usage] Regarding multiple calls of align2d.py 2011/05/24
- From: Modeller Caretaker <>
[modeller_usage] NADPH 2011/05/25
- From: flavio seixas <>
Re: [modeller_usage] NADPH 2011/05/25
- From: Modeller Caretaker <>
[modeller_usage] problem with mac version 2011/06/08
- From: Anthony Couvreux <>
Re: [modeller_usage] problem with mac version 2011/06/08
- From: Modeller Caretaker <>
[modeller_usage] Fwd: muti template problem 2011/06/16
- From: shikha agarwal <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 90 2011/06/16
- From: Ashish Runthala <>
Re: [modeller_usage] Fwd: muti template problem 2011/06/16
- From: Modeller Caretaker <>
[modeller_usage] Restrain problem 2011/06/18
- From: flavio seixas <>
Re: [modeller_usage] Restrain problem 2011/06/18
- From: João Rodrigues <>
Re: [modeller_usage] Restrain problem 2011/06/18
- From: Modeller Caretaker <>
[modeller_usage] how to download 2011/06/20
- From: Victor <>
Re: [modeller_usage] how to download 2011/06/20
- From: Modeller Caretaker <>
[modeller_usage] segfault writing alignment file 2011/06/21
- From: "Meesters, Christian" <>
Re: [modeller_usage] segfault writing alignment file 2011/06/22
- From: Modeller Caretaker <>
[modeller_usage] Two domains get oriented randomly although modelled from a single template 2011/06/30
- From: Чугунов Антон <>
[modeller_usage] loop_refine.py parallel error 2011/06/30
- From: "刘吉元" <>
Re: [modeller_usage] loop_refine.py parallel error 2011/06/30
- From: Modeller Caretaker <>
Re: [modeller_usage] Two domains get oriented randomly although modelled from a single template 2011/06/30
- From: Modeller Caretaker <>
[modeller_usage] Regarding Modeller model building script 2011/07/01
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Modeller model building script 2011/07/01
- From: Modeller Caretaker <>
Re: [modeller_usage] FATAL ERROR: MODINSTALL9v9 environment variable not set: incomplete MODELLER installation on Ubuntu 10.4 2011/07/03
- From: R K Belew <>
Re: [modeller_usage] FATAL ERROR: MODINSTALL9v9 environment variable not set: incomplete MODELLER installation on Ubuntu 10.4 2011/07/03
- From: Modeller Caretaker <>
[modeller_usage] reproduction 2011/07/04
- From: Jean-Paul Armache <>
Re: [modeller_usage] reproduction 2011/07/05
- From: Modeller Caretaker <>
[modeller_usage] optimize.py 2011/07/06
- From: MUSTAFA BUGHIO <>
[modeller_usage] Modelling of multi-domain protein from oligomeric template 2011/07/06
- From: Chugunov Anton <>
Re: [modeller_usage] optimize.py 2011/07/06
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling of multi-domain protein from oligomeric template 2011/07/06
- From: Modeller Caretaker <>
[modeller_usage] Multi-chain modeling 2011/07/13
- From: MUSTAFA BUGHIO <>
[modeller_usage] Disulphide patch 2011/07/13
- From: MUSTAFA BUGHIO <>
[modeller_usage] multichain modeling 2011/07/13
- From: MUSTAFA BUGHIO <>
Re: [modeller_usage] Multi-chain modeling 2011/07/13
- From: Modeller Caretaker <>
Re: [modeller_usage] Disulphide patch 2011/07/13
- From: Modeller Caretaker <>
Re: [modeller_usage] multichain modeling 2011/07/13
- From: Modeller Caretaker <>
[modeller_usage] Model Multi chain 2011/07/14
- From: MUSTAFA BUGHIO <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 98 2011/07/15
- From: Ashish Runthala <>
Re: [modeller_usage] Model Multi chain 2011/07/15
- From: Modeller Caretaker <>
[modeller_usage] ModWeb details -> Modeller? 2011/07/17
- From: richard k belew <>
[modeller_usage] Help with modeller 9.9 in windows 2011/07/18
- From: "Greene, Brandon Lee" <>
Re: [modeller_usage] ModWeb details -> Modeller? 2011/07/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Help with modeller 9.9 in windows 2011/07/18
- From: Modeller Caretaker <>
[modeller_usage] Multiple Sequence Alignment vs Single Alignment 2011/07/21
- From: Daniel Li <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 103 2011/07/21
- From: Ashish Runthala <>
Re: [modeller_usage] Multiple Sequence Alignment vs Single Alignment 2011/07/21
- From: Modeller Caretaker <>
[modeller_usage] SALIGN ERROR to clarify 2011/07/21
- From: Nava Moran <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 104 2011/07/21
- From: Ashish Runthala <>
Re: [modeller_usage] SALIGN ERROR to clarify 2011/07/21
- From: Modeller Caretaker <>
[modeller_usage] Dope profile of tetramer 2011/07/22
- From: Matthias Schmidt <>
Re: [modeller_usage] Dope profile of tetramer 2011/07/22
- From: Modeller Caretaker <>
[modeller_usage] How to build customized salign result? 2011/07/25
- From: Ashish Runthala <>
Re: [modeller_usage] How to build customized salign result? 2011/07/25
- From: Modeller Caretaker <>
[modeller_usage] Good Quality Score 2011/07/25
- From: Brian Tsui <>
Re: [modeller_usage] Good Quality Score 2011/07/26
- From: Modeller Caretaker <>
Re: [modeller_usage] Good Quality Score 2011/07/26
- From: Brian Tsui <>
Re: [modeller_usage] Good Quality Score 2011/07/28
- From: Modeller Caretaker <>
[modeller_usage] Regarding Proper Alignment 2011/07/28
- From: Ashish Runthala <>
Re: [modeller_usage] Regarding Proper Alignment 2011/07/29
- From: Modeller Caretaker <>
[modeller_usage] Selection of Model 2011/07/30
- From: MUSTAFA BUGHIO <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 108 2011/07/30
- From: Ashish Runthala <>
[modeller_usage] Regarding Optimal Alignment 2011/08/02
- From: Ashish Runthala <>
[modeller_usage] using SALIGN-error 2011/08/02
- From: Nava Moran <>
Re: [modeller_usage] Regarding Optimal Alignment 2011/08/02
- From: Modeller Caretaker <>
Re: [modeller_usage] using SALIGN-error 2011/08/02
- From: Modeller Caretaker <>
[modeller_usage] import pylab ImportError: No module named pylab 2011/08/04
- From: "刘吉元" <>
Re: [modeller_usage] import pylab ImportError: No module named pylab 2011/08/04
- From: Modeller Caretaker <>
[modeller_usage] ranking loop scores 2011/08/15
- From: flavio seixas <>
[modeller_usage] I need some information about an salign module 2011/08/15
- From: Ashish Runthala <>
Re: [modeller_usage] ranking loop scores 2011/08/15
- From: Modeller Caretaker <>
Re: [modeller_usage] I need some information about an salign module 2011/08/15
- From: Modeller Caretaker <>
[modeller_usage] plot_profiles.py run error 2011/08/22
- From: "刘吉元" <>
Re: [modeller_usage] plot_profiles.py run error 2011/08/22
- From: Modeller Caretaker <>
[modeller_usage] GA341 score vector? 2011/08/22
- From: R K Belew <>
[modeller_usage] GA341 score vector - PS 2011/08/22
- From: R K Belew <>
Re: [modeller_usage] GA341 score vector? 2011/08/22
- From: Modeller Caretaker <>
[modeller_usage] build profile problem 2011/08/26
- From: Bishwajit Das <>
[modeller_usage] Fwd: build profile problem 2011/08/26
- From: Bishwajit Das <>
Re: [modeller_usage] build profile problem 2011/08/26
- From: Modeller Caretaker <>
Re: [modeller_usage] build profile problem 2011/08/26
- From: Modeller Caretaker <>
[modeller_usage] To generate P(r) of SAXS from a PDB model 2011/08/30
- From: Zhong Huang <>
Re: [modeller_usage] To generate P(r) of SAXS from a PDB model 2011/08/30
- From: Modeller Caretaker <>
[modeller_usage] MODELLER thinks HSEs are ATOM instead of HETATM 2011/09/01
- From: Yingjie Lin <>
Re: [modeller_usage] MODELLER thinks HSEs are ATOM instead of HETATM 2011/09/02
- From: Modeller Caretaker <>
Re: [modeller_usage] MODELLER thinks HSEs are ATOM instead of HETATM 2011/09/02
- From: Modeller Caretaker <>
[modeller_usage] Restricting parts of the protein to alpha helix 2011/09/05
- From:
Re: [modeller_usage] Restricting parts of the protein to alpha helix 2011/09/05
- From: Anthony Couvreux <>
Re: [modeller_usage] Restricting parts of the protein to alpha helix 2011/09/06
- From: Modeller Caretaker <>
[modeller_usage] Regarding align2d & CS-BLAST alignments PLEASE ANSWER ME QUICKER ..I AM STUCK UP IN A FEW CASES 2011/09/12
- From: Ashish Runthala <>
[modeller_usage] Modeller 9.10 release 2011/09/29
- From: Modeller Caretaker <>
Re: [modeller_usage] Regarding align2d & CS-BLAST alignments PLEASE ANSWER ME QUICKER ..I AM STUCK UP IN A FEW CASES 2011/10/03
- From: Modeller Caretaker <>
[modeller_usage] energy 2011/10/16
- From: Jin-Rui Xu <>
Re: [modeller_usage] energy 2011/10/16
- From: Modeller Caretaker <>
[modeller_usage] Changing the directory. 2011/10/16
- From: Sehrish Batool <>
Re: [modeller_usage] Restraining Secondary Structure 2011/10/17
- From: bharat lal <>
[modeller_usage] Correct the small scripting error 2011/10/17
- From: Ashish Runthala <>
Re: [modeller_usage] Changing the directory. 2011/10/17
- From: Modeller Caretaker <>
Re: [modeller_usage] Restraining Secondary Structure 2011/10/17
- From: Modeller Caretaker <>
[modeller_usage] Request for papers. 2011/10/17
- From: Sehrish Batool <>
Re: [modeller_usage] Request for papers. 2011/10/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller on SGE 2011/10/18
- From: Modeller Caretaker <>
[modeller_usage] Modeling GPCRs 2011/10/18
- From: Maggie Pruitt <>
Re: [modeller_usage] Modeling GPCRs 2011/10/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeling GPCRs 2011/10/18
- From: Hugo Gutierrez de Teran <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 123 2011/10/19
- From: Ashish Runthala <>
[modeller_usage] induced fit modeling by Modeller or ModLoop 2011/10/21
- From: Andrew Voronkov <>
[modeller_usage] Fwd: modeller_usage Digest, Vol 10, Issue 124 2011/10/23
- From: Andrew Voronkov <>
[modeller_usage] [salign] concerning the manual : feature 2 and structure superposition 2011/10/24
- From: Benjamin SCHWARZ <>
[modeller_usage] problems with randomization 2011/10/24
- From: Igor Dvortsov <>
[modeller_usage] [clustering] does MODELLER provide tools to cluster structures ? 2011/10/24
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] problems with randomization 2011/10/24
- From: Modeller Caretaker <>
Re: [modeller_usage] [salign] concerning the manual : feature 2 and structure superposition 2011/10/24
- From: Modeller Caretaker <>
Re: [modeller_usage] [clustering] does MODELLER provide tools to cluster structures ? 2011/10/24
- From: Modeller Caretaker <>
Re: [modeller_usage] [salign] concerning the manual : feature 2 and structure superposition 2011/10/24
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] [clustering] does MODELLER provide tools to cluster structures ? 2011/10/24
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] [salign] concerning the manual : feature 2 and structure superposition 2011/10/24
- From: Modeller Caretaker <>
[modeller_usage] Different behavior about mislabeled HETATMs since 9v9 2011/10/25
- From: Yingjie Lin <>
Re: [modeller_usage] Different behavior about mislabeled HETATMs since 9v9 2011/10/25
- From: Modeller Caretaker <>
[modeller_usage] FATAL ERROR: MODINSTALL9v01 environment variable not set: incomplete MODELLER installation. 2011/10/26
- From: Andrew Voronkov <>
Re: [modeller_usage] FATAL ERROR: MODINSTALL9v01 environment variable not set: incomplete MODELLER installation. 2011/10/26
- From: Modeller Caretaker <>
[modeller_usage] Restraint conversion 2011/10/27
- From: Matthias Schmidt <>
Re: [modeller_usage] Restraint conversion 2011/10/27
- From: Modeller Caretaker <>
[modeller_usage] What is the mistake in this set of lines? 2011/10/27
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 124 2011/10/28
- From: Andrew Voronkov <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 130 2011/10/28
- From: Ashish Runthala <>
Re: [modeller_usage] What is the mistake in this set of lines? 2011/10/28
- From: Ashish Runthala <>
Re: [modeller_usage] What is the mistake in this set of lines? 2011/10/30
- From: Ashish Runthala <>
[modeller_usage] Build a model with multiple models 2011/10/31
- From: junior <>
Re: [modeller_usage] Build a model with multiple models 2011/10/31
- From: Mensur Dlakic <>
Re: [modeller_usage] What is the mistake in this set of lines 2011/10/31
- From: Igor Dvortsov <>
[modeller_usage] Homology Modeling of the Loop 2011/10/31
- From: Alexander Predeus <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 132 2011/10/31
- From: Ashish Runthala <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 134 2011/11/01
- From: Ashish Runthala <>
[modeller_usage] automodel.max_molpdf recommended values and usage format 2011/11/01
- From: Andrew Voronkov <>
Re: [modeller_usage] Build a model with multiple models 2011/11/01
- From: Modeller Caretaker <>
Re: [modeller_usage] automodel.max_molpdf recommended values and usage format 2011/11/01
- From: Modeller Caretaker <>
[modeller_usage] flexible ligand parametrization using nonstd_restraints(aln) 2011/11/01
- From: Andrew Voronkov <>
[modeller_usage] parallelization and the master/slaves' env.io.atom_files_directory? 2011/11/01
- From: R K Belew <>
Re: [modeller_usage] parallelization and the master/slaves' env.io.atom_files_directory? 2011/11/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Homology Modeling of the Loop 2011/11/01
- From: Modeller Caretaker <>
Re: [modeller_usage] flexible ligand parametrization using nonstd_restraints(aln) 2011/11/01
- From: Modeller Caretaker <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 136 2011/11/01
- From: Ashish Runthala <>
Re: [modeller_usage] Build a model with multiple models 2011/11/02
- From: Mensur Dlakic <>
[modeller_usage] parallelization with randomize.dihedrals? 2011/11/04
- From: R K Belew <>
Re: [modeller_usage] parallelization with randomize.dihedrals? 2011/11/04
- From: Modeller Caretaker <>
[modeller_usage] Fwd: automodel.max_molpdf recommended values and usage format 2011/11/07
- From: Andrew Voronkov <>
Re: [modeller_usage] Fwd: automodel.max_molpdf recommended values and usage format 2011/11/07
- From: Modeller Caretaker <>
[modeller_usage] Lucky16: Ordered search across multiple models? 2011/11/07
- From: R K Belew <>
[modeller_usage] Fwd: Fwd: automodel.max_molpdf recommended values and usage format 2011/11/08
- From: Andrew Voronkov <>
Re: [modeller_usage] [clustering] does MODELLER provide tools to cluster structures ? 2011/11/08
- From: Benjamin SCHWARZ <>
Re: [modeller_usage] [clustering] does MODELLER provide tools to cluster structures ? 2011/11/08
- From: Modeller Caretaker <>
Re: [modeller_usage] Lucky16: Ordered search across multiple models? 2011/11/10
- From: Modeller Caretaker <>
[modeller_usage] error with loops in transmembrane receptor model 2011/11/16
- From: "Vasillis Myrianthopoulos" <>
[modeller_usage] error with loops in transmembrane receptor model 2011/11/16
- From: "Vasillis Myrianthopoulos" <>
Re: [modeller_usage] error with loops in transmembrane receptor model 2011/11/16
- From: Modeller Caretaker <>
[modeller_usage] Problem in running script file 2011/11/16
- From: Anushree Tripathi <>
Re: [modeller_usage] Problem in running script file 2011/11/16
- From: Modeller Caretaker <>
[modeller_usage] Error in align codes 2011/11/17
- From: si yang <>
[modeller_usage] Protein-DNA loop model 2011/11/17
- From: Rubben Torella <>
[modeller_usage] error in align codes 2011/11/17
- From: si yang <>
Re: [modeller_usage] Protein-DNA loop model 2011/11/17
- From: Modeller Caretaker <>
Re: [modeller_usage] error in align codes 2011/11/17
- From: Modeller Caretaker <>
[modeller_usage] Loop Model ranking 2011/11/22
- From: flavio seixas <>
Re: [modeller_usage] Loop Model ranking 2011/11/22
- From: Modeller Caretaker <>
Re: [modeller_usage] Loop Model ranking 2011/11/23
- From: flavio seixas <>
Re: [modeller_usage] Loop Model ranking 2011/11/23
- From: Modeller Caretaker <>
[modeller_usage] loop modelling 2011/11/23
- From: Bishwajit Das <>
[modeller_usage] Loop modelling 2011/11/23
- From: Bishwajit Das <>
Re: [modeller_usage] Loop modelling 2011/11/23
- From: Modeller Caretaker <>
[modeller_usage] sequence identity 2011/11/26
- From: Полякова Марина <>
[modeller_usage] Refine part of an existing model 2011/11/26
- From: flavio seixas <>
Re: [modeller_usage] sequence identity 2011/11/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Refine part of an existing model 2011/11/29
- From: flavio seixas <>
Re: [modeller_usage] Refine part of an existing model 2011/11/29
- From: Modeller Caretaker <>
[modeller_usage] Is there any Modeller Script to refine unaligned loop chunks 2011/11/30
- From: Ashish Runthala <>
[modeller_usage] Enc: Error with import os 2011/11/30
- From: Bruno Madio <>
Re: [modeller_usage] modeller_usage Digest, Vol 10, Issue 148 2011/11/30
- From: Ashish Runthala <>
Re: [modeller_usage] Enc: Error with import os 2011/11/30
- From: Modeller Caretaker <>
[modeller_usage] have problem running modeller 9.10 2011/12/03
- From: Yu Li <>
Re: [modeller_usage] have problem running modeller 9.10 2011/12/03
- From: Modeller Caretaker <>
Re: [modeller_usage] have problem running modeller 9.10 2011/12/04
- From: Yu Li <>
Re: [modeller_usage] have problem running modeller 9.10 2011/12/04
- From: Modeller Caretaker <>
[modeller_usage] windows 7, modeller 9.10 and python 2.6.6 2011/12/09
- From: Ludovic Autin <>
Re: [modeller_usage] windows 7, modeller 9.10 and python 2.6.6 2011/12/09
- From: Modeller Caretaker <>
Re: [modeller_usage] windows 7, modeller 9.10 and python 2.6.6 2011/12/09
- From: Modeller Caretaker <>
[modeller_usage] What is the difference in salign_multiple_struc among these 2 conditions 2011/12/14
- From: Ashish Runthala <>
Re: [modeller_usage] What is the difference in salign_multiple_struc among these 2 conditions 2011/12/14
- From: Modeller Caretaker <>
[modeller_usage] Who is best among these to search templates? 2011/12/19
- From: Ashish Runthala <>
Re: [modeller_usage] Who is best among these to search templates? 2011/12/19
- From: Mensur Dlakic <>
[modeller_usage] pdb code 2011/12/21
- From: si yang <>
Re: [modeller_usage] pdb code 2011/12/21
- From: flavio seixas <>
[modeller_usage] Is it possible to change the output file directory? 2011/12/29
- From: "조윤성" <>
[modeller_usage] Error in opening log file. 2011/12/29
- From: Prija Ponnan <>

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