Re: [modeller_usage] Retrieving full sequence from PDB file

[Modeller Caretaker <>]

On 2/7/11 9:23 AM, sneha bairy wrote:
> For the project I am working on, I need all the sequence residues from
> the pdb file irrespective of whether the residues have atom information
> or not. I saw that there is a way to write out the residues with atom
> information from the pdb file. But is there a way to write out all the
> sequence residues mentioned at the top of the pdb file?

Not with Modeller, no - it only reads the ATOM and HETATM records, not 
the SEQRES records. But the SEQRES records have a very simple format - 
it would be easy to write a Perl or Python script to extract that 
sequence if you can't find an existing piece of software that does it.

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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