Re: [modeller_usage] initial model error

[Modeller Caretaker <>]

On 2/16/11 11:53 AM, albert wrote:
> I would like to build a model staring from my own model. but it didn't
> work, it is said:
>
> -------log--------------
> _modeller.ModellerError: rdpdb___303E> No atoms were read from the
> specified input PDB file, since the starting residue number and/or chain
> id in MODEL_SEGMENT (or the alignment file header) was not found;
> requested starting position: residue number " ", chain " "; atom file
> name: init.pdb
> --------------------------
>
> In fact in the alignment file I already add something like this:
>
> -------------------align----------------------------
>  >P1;seq
> sequence:seq: : : : ::: 0.00: 0.00

The initial model corresponds to this sequence in your alignment file, 
so you need to make sure that the residue/chain IDs in the alignment 
file header match those in the PDB.

	Ben Webb, Modeller Caretaker
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