[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] Structural alignment using iterative_structural_alignment

On 2/25/11 9:48 AM, Seungyeul Yoo wrote:

I was trying to clean two pdb files and superpose them based on the
pairwise structural alignment.

...

But when I replaced it to
'modeller.salign.iterative_structural_align(aln), I had error message like:

My best guess is that every combination of parameters failed for the 
first loop, so it has no alignment to refine. If you can send me your 
full inputs (which two PDBs are you trying to align?) I'll see if it can 
be fixed.

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage