[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] MSE query



On 4/8/11 9:45 PM,  wrote:
I have a question about selenomethionine residues in PDB file. In the
original sequence file, these are methionine residues but in PDB these
are selenomethionine. I am using this PDB structure as a template. Can
you suggest what is to be done about these residues?

When Modeller reads in your template PDB file, it will automatically translate any selenomethionine residues to regular methionine. See http://salilab.org/modeller/9.9/manual/node171.html

Thus, use the regular methionine 'M' one-letter code in your alignment for these residues.

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage