On 4/12/11 7:27 AM, Benjamin SCHWARZ wrote:
If I understand well, the salign.iterative_structural_align() function is an exact implementation of the algorithm presented in [Madhusudhan2009]. Is there a python script version of this function ? Something that could be tweaked and modified...
Of course - all the Modeller scripts are Python scripts, so you can modify them to your heart's content. Look at modlib/modeller/salign.py.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage