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Re: [modeller_usage] retrieve fitted models after iterative_structural_align()
- To: Benjamin SCHWARZ <>
- Subject: Re: [modeller_usage] retrieve fitted models after iterative_structural_align()
- From: Modeller Caretaker <>
- Date: Wed, 18 May 2011 08:18:41 -0700
- Cc: modeller <>
On 5/18/11 7:18 AM, Benjamin SCHWARZ wrote:
Can someone tell me what is the (best) way to extract fitted models
after an iterative_structural_align() ?
Use Structure.write():
http://salilab.org/modeller/9.9/manual/node315.html
aln = alignment( env )
for model in models:
aln.append_model( model )
salign.iterative_structural_align( aln )
for s in aln:
s.write('%s-fitted.pdb' % s.code)
Ben Webb, Modeller Caretaker
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