This is with reference to the python file
***examples/commands/patch_disulfides.py
<http://salilab.org/modeller/examples/commands/patch_disulfides.py> i am
building a model with two disulphide bridges position:
*138 CYS -> 152 CYS
198 CYS -> 209 CYS
where as the python file contains example for one disulphide bridge, how
can i edit the file or there is any other procedure to solve this
problem. Should i use above mentioned py file or patch.py for assigning
developing disulphide bridge.
This example auto-detects disulfide bridges - it looks at the template
(in the case of patch_ss_templates) or the model (patch_ss) and simply
looks for all pairs of Cys SG atoms that are close, and assumes there is
a disulfide there. That's not what you want if you have a specific list
of disulfides to restrain. In that case you would simply use the patch()
command directly. See