[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] How to build customized salign result?

On 07/25/2011 12:38 AM, Ashish Runthala wrote:

Tell me the solution to a query. Suppose I have 4 templates for a
target sequence. And while using salign_multiple.py, I want to start
the progressive alignment specifically from template 2 only, to let
others follow this template2 alignment. Tell me the way to make
salign force the progressive alignment starting on from a specific
template only?
Progressive alignment aligns each sequence to the first sequence in the alignment, so simply put template 2 first in your alignment file (or list the align_codes explicitly when you read in the alignment file, and put template 2's align code first in that list). 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage