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Re: [modeller_usage] error in align codes

On 11/17/11 1:38 AM, si yang wrote:

Protein specified in ALIGN_CODES<i>, was not found in the alignment
file;ALIGN_CODES<       1>= ALL
The alignment file i saved in plain text format, with suffix .ali
(bleg1_2439.ali), is that affected the reading by modeller?
Plain text is fine (almost all Modeller files need to be plain text) but it sounds like your alignment file is not valid PIR format. See http://salilab.org/modeller/9.10/manual/node473.html 

	Ben Webb, Modeller Caretaker
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