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[modeller_usage] (no subject)



Back to Modeller from a long absence, I am faced by a
trivial, common issue; "no module named modeller" when running
"fill_resid.py", which
reads:


from modeller import *
from modeller.automodel import * # Load the automodel class

long.verbose()
env = environ()

# directories for input atom files
env.io.atom_files_directory = ['.', '../atom_files']

a = loopmodel(env, alnfile = 'alignment.ali',
             knowns = 'my, sequence = 'my_fill')
a.starting_model= 1
a.ending_model  = 1

a.loop.starting_model = 1
a.loop.ending_model   = 2
a.loop.md_level       = refine.fast

a.make()


fill_resid.py, my.pdb, and alignement.ali are in the same dworking directory


(My aim is to fill lacking residues in ltwo loops of a protein)
The software is correctly installed in debian amd64:

francesco@gig64:~$ which mod9.10
/usr/bin/mod9.10
francesco@gig64:~$


Thanks for advice
francesco pietra