Modeller_Usage Mailing List (by date)

Thread Index

Re: [modeller_usage] Is it possible to change the output file directory? 2012/01/03
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Error in opening log file. 2012/01/03
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] CSA incorporation in salign 2012/01/04
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] CSA incorporation in salign 2012/01/05
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Plot profile of All or selected assessment methods 2012/01/06
- From: junior <sam.kauba@gmail.com>
Re: [modeller_usage] What is Modeller v9.10 , can you explain to me? 2012/01/06
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Is there a way to it? 2012/01/10
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] Is there a way to it? 2012/01/10
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Is there a way to it? 2012/01/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Import Error: No module named _modeler 2012/01/28
- From: "Naresh" <nareshibt@gmail.com>
Re: [modeller_usage] Import Error: No module named _modeler 2012/01/28
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 3O96 2012/01/29
- From: "Naresh" <nareshibt@gmail.com>
Re: [modeller_usage] modeller.ModellerError: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 3O96 2012/01/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] how to analyse the output file of align2d.py 2012/01/29
- From: "Naresh" <nareshibt@gmail.com>
Re: [modeller_usage] how to analyse the output file of align2d.py 2012/01/30
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Need Help getting started 2012/01/30
- From: "Henry, Marcia B" <mhenry3@tulane.edu>
[modeller_usage] Need Help getting started 2012/01/30
- From: "Henry, Marcia B" <mhenry3@tulane.edu>
Re: [modeller_usage] Need Help getting started 2012/01/30
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Phosphoserine residue 2012/01/30
- From: Mike Bramson <bramson@stanford.edu>
[modeller_usage] (no subject) 2012/01/31
- From: Francesco Pietra <chiendarret@gmail.com>
Re: [modeller_usage] (no subject) 2012/01/31
- From: Francesco Pietra <chiendarret@gmail.com>
[modeller_usage] libraries issue 2012/01/31
- From: Francesco Pietra <chiendarret@gmail.com>
Re: [modeller_usage] libraries issue 2012/01/31
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] generating homology models of reduced disulfide bonds 2012/02/01
- From: Stephanie Schaefer <saschaef@UDel.Edu>
[modeller_usage] problems with filling missing residue without moving exing ones 2012/02/02
- From: Francesco Pietra <chiendarret@gmail.com>
Re: [modeller_usage] problems with filling missing residue without moving exing ones 2012/02/02
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] generating homology models of reduced disulfide bonds 2012/02/02
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding Model Clustering 2012/02/02
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Regarding Scoring Parameters 2012/02/08
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] modeling of movement of domain 2012/02/09
- From: "Ahmadreza Mehdipour" <Ahmadreza.Mehdipour@biophys.mpg.de>
Re: [modeller_usage] Regarding Scoring Parameters 2012/02/09
- From: Mensur Dlakic <mdlakic@montana.edu>
[modeller_usage] (no subject) 2012/02/09
- From: ARVIND PAL <arvind.sbt@gmail.com>
Re: [modeller_usage] modeling of movement of domain 2012/02/10
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] (no subject) 2012/02/10
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeling of movement of domain 2012/02/11
- From: "Ahmadreza Mehdipour" <Ahmadreza.Mehdipour@biophys.mpg.de>
Re: [modeller_usage] modeling of movement of domain 2012/02/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] run two file or two restrained together 2012/02/13
- From: Pablo Fernandez Millan <pfmcri@ibmb.csic.es>
Re: [modeller_usage] run two file or two restrained together 2012/02/13
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] MAPRES limit 2012/02/14
- From: "Johs, Alexander" <johsa@ornl.gov>
Re: [modeller_usage] MAPRES limit 2012/02/14
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] error 2012/02/16
- From: Rana Adnantahir <ranaadnantahir@yahoo.com>
Re: [modeller_usage] error 2012/02/16
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] to generate the DOPE plot 2012/02/17
- From: Xiao-Ping Zhang <xpzhang@ucdavis.edu>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Xiao-Ping Zhang <xpzhang@ucdavis.edu>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] to generate the DOPE plot 2012/02/17
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] error in Virutualbox 2012/02/18
- From: albert <leuven@yeah.net>
Re: [modeller_usage] error in Virutualbox 2012/02/18
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] loop error 2012/02/19
- From: albert <leuven@yeah.net>
Re: [modeller_usage] loop error 2012/02/19
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Confusion between two models 2012/02/19
- From: hari krishna <haricoolguy111@gmail.com>
[modeller_usage] energy function scaling factors 2012/02/20
- From: Armin Meier <meier@lmb.uni-muenchen.de>
Re: [modeller_usage] energy function scaling factors 2012/02/20
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Desmond Kho <teckho.316@gmail.com>
Re: [modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] How to use MODELLER as an ordinary Python module? 2012/02/21
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Error: Ran out of slaves to run tasks 2012/02/21
- From: Xiao-Ping Zhang <xpzhang@ucdavis.edu>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/21
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] (no subject) 2012/02/21
- From: ARVIND PAL <arvind.sbt@gmail.com>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/23
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Error: Ran out of slaves to run tasks 2012/02/23
- From: Xiao-Ping Zhang <xpzhang@ucdavis.edu>
[modeller_usage] Special g 2012/02/26
- From: zhoujinming <zhou_jim@hotmail.com>
[modeller_usage] a question about loop refinement 2012/02/29
- From: mircial@sjtu.edu.cn
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Susana Tomasio <susietomasio@gmail.com>
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Error running build_profile.py :Not enough bins in histogram 2012/02/29
- From: Susana Tomasio <susietomasio@gmail.com>
Re: [modeller_usage] a question about loop refinement 2012/02/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Template selection criteria. 2012/03/01
- From: ARVIND PAL <arvind.sbt@gmail.com>
Re: [modeller_usage] Template selection criteria. 2012/03/01
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] a 20 aa loop 2012/03/02
- From: albert <leuven@yeah.net>
[modeller_usage] PDF score question 2012/03/02
- From: albert <leuven@yeah.net>
Re: [modeller_usage] PDF score question 2012/03/02
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] a 20 aa loop 2012/03/02
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] PDF score question 2012/03/02
- From: albert <leuven@yeah.net>
Re: [modeller_usage] PDF score question 2012/03/02
- From: albert <leuven@yeah.net>
Re: [modeller_usage] PDF score question 2012/03/03
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding Usage of BLOSUM Matrix 2012/03/03
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 25 2012/03/03
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Regarding BLOSUM MATRICES & MODELLER ALIGNMENT 2012/03/04
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Modeller9.10 on Centos 6.2 2012/03/06
- From: Irene Newhouse <irenenew@hawaii.edu>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/06
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Irene Newhouse <irenenew@hawaii.edu>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Modeller9.10 on Centos 6.2 2012/03/07
- From: Irene Newhouse <irenenew@hawaii.edu>
[modeller_usage] (no subject) 2012/03/11
- From: pawan raghav <pwnrghv@yahoo.co.in>
[modeller_usage] Regarding .tree 2012/03/12
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/15
- From: Alexander Predeus <predeus@gmail.com>
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/15
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/16
- From: Alexander Predeus <predeus@gmail.com>
Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex 2012/03/16
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 30 2012/03/16
- From: Alexander Predeus <predeus@gmail.com>
[modeller_usage] ALIGN_CODES(i) error, Again 2012/03/19
- From: "Zumot, Elia Nabil" <enz1@pitt.edu>
Re: [modeller_usage] ALIGN_CODES(i) error, Again 2012/03/19
- From: Robert Campbell <robert.campbell@queensu.ca>
[modeller_usage] loop refinement 2012/03/21
- From: rjayashree13-science@yahoo.co.in
[modeller_usage] calculate energy for a given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z) 2012/03/22
- From: Valerio Lupperger <valerio.lupperger@gmx.net>
[modeller_usage] Is it possible to calculate energy for the given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z)? 2012/03/22
- From: Valerio Lupperger <valerio.lupperger@gmx.net>
Re: [modeller_usage] 2. loop refinement (rjayashree13-science@yahoo.co.in) from modeller_usage Digest, Vol 11, Issue 32 2012/03/22
- From: "Jan H. Löhr" <loehr@chemie.uni-hamburg.de>
[modeller_usage] homology modelling with multiple subunits 2012/03/22
- From: "Zumot, Elia Nabil" <enz1@pitt.edu>
Re: [modeller_usage] Is it possible to calculate energy for the given structure with MODELLER's C API and derivative with respect to all coordinates (x, y, z)? 2012/03/22
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] homology modelling with multiple subunits 2012/03/22
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding protein 3D structure modeling 2012/03/23
- From: vishal Nemaysh <vishal.bioinfotech@gmail.com>
Re: [modeller_usage] Regarding protein 3D structure modeling 2012/03/24
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] mutate_selection.py 2012/03/26
- From: ARVIND PAL <arvind.sbt@gmail.com>
Re: [modeller_usage] mutate_selection.py 2012/03/26
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Regarding protein 3D structure modeling 2012/03/26
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] DNA-protein complex modelling discrepancy!! 2012/03/28
- From: Sumedha Roy <sumedharoy@gmail.com>
[modeller_usage] Model Clustering 2012/03/28
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 35 2012/03/28
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 35 2012/03/29
- From: Sumedha Roy <sumedharoy@gmail.com>
Re: [modeller_usage] DNA-protein complex modelling discrepancy!! 2012/03/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: richard k belew <rbelew@ucsd.edu>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: richard k belew <rbelew@ucsd.edu>
Re: [modeller_usage] model quality: GA341, DOPE and zDOPE 2012/03/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] rmsd from template 2012/04/02
- From: Matthias Schmidt <matthias.rene.schmidt@gmail.com>
Re: [modeller_usage] rmsd from template 2012/04/02
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] problem in modeling protein with ligand 2012/04/05
- From: NUTAN CHAUHAN <nutanbt@yahoo.co.in>
Re: [modeller_usage] problem in modeling protein with ligand 2012/04/05
- From: flavio seixas <oivalf_nix@yahoo.com>
[modeller_usage] problem with Chain.join() 2012/04/05
- From: Jan Kosinski <jan.kosinski@gmail.com>
Re: [modeller_usage] problem with Chain.join() 2012/04/05
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] problem with Chain.join() 2012/04/06
- From: Jan Kosinski <jan.kosinski@gmail.com>
[modeller_usage] In what are the initial structures different? 2012/04/08
- From: BIN ZHANG <zhngbn@gmail.com>
[modeller_usage] Error in ALIGN_CODES(i) 2012/04/09
- From: Sumedha Roy <sumedharoy@gmail.com>
Re: [modeller_usage] Error in ALIGN_CODES(i) 2012/04/09
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] In what are the initial structures different? 2012/04/09
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 42 2012/04/09
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] calculating DOPE score 2012/04/09
- From: NUTAN CHAUHAN <nutanbt@yahoo.co.in>
Re: [modeller_usage] calculating DOPE score 2012/04/09
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 44 2012/04/10
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 44 2012/04/10
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding Model Building 2012/04/22
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] Regarding Model Building 2012/04/23
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] 2 BLK in one model 2012/04/24
- From: Isaure Chauvot de Beauchêne <ichauvot@lbpa.ens-cachan.fr>
[modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/25
- From: Jérôme Hénin <jhenin@imm.cnrs.fr>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/26
- From: Thomas Evangelidis <tevang3@gmail.com>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/04/26
- From: Jérôme Hénin <jhenin@imm.cnrs.fr>
[modeller_usage] modelling with hetatms 2012/04/26
- From: "Offord, Victoria" <vofford@rvc.ac.uk>
[modeller_usage] Invitation to connect on LinkedIn 2012/04/26
- From: Uday Kumar <udaykumar.in@gmail.com>
[modeller_usage] Invitation to connect on LinkedIn 2012/04/26
- From: Uday Kumar <udaykumar.in@gmail.com>
Re: [modeller_usage] (no subject) 2012/04/27
- From: sree jyothi <sreejyothi_in@yahoo.com>
[modeller_usage] procheck problem. 2012/04/30
- From: vishal Nemaysh <vishal.bioinfotech@gmail.com>
Re: [modeller_usage] procheck problem. 2012/04/30
- From: Thomas Evangelidis <tevang3@gmail.com>
Re: [modeller_usage] modelling with hetatms 2012/04/30
- From: Joel Tyndall <joel.tyndall@otago.ac.nz>
Re: [modeller_usage] procheck problem. 2012/04/30
- From: flavio seixas <oivalf_nix@yahoo.com>
Re: [modeller_usage] modelling with hetatms 2012/05/01
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Loop refinement: setting the right anchors in multichain models 2012/05/01
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modelling with hetatms 2012/05/01
- From: "Offord, Victoria" <vofford@rvc.ac.uk>
Re: [modeller_usage] 2 BLK in one model 2012/05/01
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] missing residues 2012/05/03
- From: Mary Varughese <maryvj1985@gmail.com>
Re: [modeller_usage] missing residues 2012/05/03
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] missing residues 2012/05/04
- From: Mary Varughese <maryvj1985@gmail.com>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 54 2012/05/04
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] missing residues 2012/05/04
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Question about alignment.check() 2012/05/05
- From: M <mja25@wp.pl>
Re: [modeller_usage] Question about alignment.check() 2012/05/05
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: EGY <mp.2egy@gmail.com>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Thomas Evangelidis <tevang3@gmail.com>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Thomas Evangelidis <tevang3@gmail.com>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: EGY <mp.2egy@gmail.com>
Re: [modeller_usage] modeling different conformations of a protein from related structures 2012/05/07
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding Constraints covered in the Salign_Multiple_Struc.py 2012/05/08
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] Regarding Constraints covered in the Salign_Multiple_Struc.py 2012/05/13
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] modeller.parallel.communicator.RemoteError 2012/05/15
- From: Xiao-Ping Zhang <xpzhang@ucdavis.edu>
Re: [modeller_usage] modeller.parallel.communicator.RemoteError 2012/05/16
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: NUTAN CHAUHAN <nutanbt@yahoo.co.in>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: NUTAN CHAUHAN <nutanbt@yahoo.co.in>
Re: [modeller_usage] modeling homodimer with hetero atoms 2012/05/18
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] short interatomic distances 2012/05/26
- From: M <mja25@wp.pl>
[modeller_usage] breaking the chain 2012/05/29
- From: M <mja25@wp.pl>
Re: [modeller_usage] breaking the chain 2012/05/29
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] short interatomic distances 2012/05/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] optimization schedule 2012/05/31
- From: M <mja25@wp.pl>
Re: [modeller_usage] optimization schedule 2012/05/31
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] PD: Re: optimization schedule 2012/05/31
- From: M <mja25@wp.pl>
Re: [modeller_usage] PD: Re: optimization schedule 2012/05/31
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] PD: Re: optimization schedule 2012/05/31
- From: M <mja25@wp.pl>
Re: [modeller_usage] PD: Re: optimization schedule 2012/05/31
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] PD: Re: optimization schedule 2012/05/31
- From: M <mja25@wp.pl>
[modeller_usage] signal peptide structure modeling 2012/05/31
- From: Kwee Hong <joyssstan0202@gmail.com>
[modeller_usage] Invitation to connect on LinkedIn 2012/06/04
- From: Arvind Pal via LinkedIn <member@linkedin.com>
[modeller_usage] Chimeric alignment - residue numbers 2012/06/05
- From: "Larsson, Per (pl6n)" <pl6n@eservices.virginia.edu>
[modeller_usage] Chimeric protein - residue numbers 2012/06/05
- From: "Larsson, Per (pl6n)" <pl6n@eservices.virginia.edu>
Re: [modeller_usage] Chimeric protein - residue numbers 2012/06/05
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Heterodimer modeling 2012/06/11
- From: Xiongzhuo Gao <gaoxiongzhuo@gmail.com>
Re: [modeller_usage] Heterodimer modeling 2012/06/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] energy function 2012/06/12
- From: Armin Meier <meier@lmb.uni-muenchen.de>
Re: [modeller_usage] energy function 2012/06/12
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] A question about using multiple template 2012/06/15
- From: Xiongzhuo Gao <gaoxiongzhuo@gmail.com>
Re: [modeller_usage] A question about using multiple template 2012/06/19
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Align Code Error 2012/06/20
- From: Austin Baker <asb93@pitt.edu>
Re: [modeller_usage] Align Code Error 2012/06/20
- From: Ignacio Ibarra <ibarra.ignacio@gmail.com>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 69 2012/06/20
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Sequence Mismatch Errors 2012/06/22
- From: Austin Baker <asb93@pitt.edu>
Re: [modeller_usage] Sequence Mismatch Errors 2012/06/22
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] missing residue build using automodel 2012/06/23
- From: Mary Varughese <maryvj1985@gmail.com>
Re: [modeller_usage] missing residue build using automodel 2012/06/23
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] HETATM MSE records 2012/06/25
- From: Thomas Gaillard <thomas.gaillard@polytechnique.edu>
Re: [modeller_usage] Sequence Mismatch Errors 2012/06/25
- From: Joel Tyndall <joel.tyndall@otago.ac.nz>
Re: [modeller_usage] HETATM MSE records 2012/06/25
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] HETATM MSE records 2012/06/29
- From: Thomas Gaillard <thomas.gaillard@polytechnique.edu>
Re: [modeller_usage] HETATM MSE records 2012/06/29
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] (no subject) 2012/07/05
- From: harpreet singh <harpreetsingh05@hotmail.com>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 73 2012/07/08
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Is the function - forms.upper_bound(..) - supposed to restrain precisely? 2012/07/11
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [modeller_usage] Is the function - forms.upper_bound(..) - supposed to restrain precisely? 2012/07/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Question about compressing Uniprot90 2012/07/11
- From: Dimitrije Jevremovic <jevremovic.dimitrije@gene.com>
Re: [modeller_usage] Question about compressing Uniprot90 2012/07/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] help required in preparing .ali file 2012/07/14
- From: "Sumra Wajid Abbasi 30-FBAS/MSBI/F09" <sumra.msbi30@iiu.edu.pk>
[modeller_usage] Problem with model-segment.py (same model obtained) 2012/07/16
- From: Lipi Thukral <lipi.thukral@igib.in>
Re: [modeller_usage] Problem with model-segment.py (same model obtained) 2012/07/16
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] help required in preparing .ali file 2012/07/16
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] ModellerError: read_te_290E> Number of residues in the alignment and pdb files are different 2012/07/16
- From: Jonathan Crane <jmcrane73@gmail.com>
Re: [modeller_usage] ModellerError: read_te_290E> Number of residues in the alignment and pdb files are different 2012/07/16
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] what based we have to select structure from DBali and how ? 2012/07/17
- From: vmahesh@ibab.ac.in
Re: [modeller_usage] doubt on input for DBAli and selecting conditions 2012/07/18
- From: vmahesh@ibab.ac.in
Re: [modeller_usage] doubt on selecting condition 2012/07/18
- From: vmahesh@ibab.ac.in
Re: [modeller_usage] what based we have to select structure from DBali and how ? 2012/07/18
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] what based we have to select structure from DBali and how ? 2012/07/19
- From: vmahesh@ibab.ac.in
[modeller_usage] non expected atoms ! 2012/07/25
- From: Anthony Couvreux <anthony.couvreux@unilim.fr>
Re: [modeller_usage] non expected atoms ! 2012/07/25
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] (no subject) 2012/07/27
- From: Othman Houcemeddine <othmanhoucemeddine@yahoo.fr>
[modeller_usage] [Fwd: Re: doubt on selecting condition] 2012/07/28
- From: vmahesh@ibab.ac.in
[modeller_usage] Biological unit 2012/07/29
- From: Po-Lin Chiu <holmeschiu@gmail.com>
Re: [modeller_usage] Biological unit 2012/07/30
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] [Fwd: Re: doubt on selecting condition] 2012/07/30
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Modelling of GFP 2012/08/04
- From: James Starlight <jmsstarlight@gmail.com>
Re: [modeller_usage] Modelling of GFP 2012/08/06
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] struggling to make structure predictions 2012/08/06
- From: "Adhikari, Badri (MU-Student)" <bap54@mail.missouri.edu>
Re: [modeller_usage] struggling to make structure predictions 2012/08/06
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Template PDB files 2012/08/07
- From: Nanda Pandey <pnanda1780@gmail.com>
Re: [modeller_usage] Template PDB files 2012/08/07
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Modelling of Chimeric protein 2012/08/08
- From: James Starlight <jmsstarlight@gmail.com>
Re: [modeller_usage] Modelling of Chimeric protein 2012/08/08
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeller_usage Digest, Vol 11, Issue 83 2012/08/09
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Membrane environment 2012/08/09
- From: Marco Lolicato <marco.lolicato@unimi.it>
[modeller_usage] (no subject) 2012/08/10
- From: Nandha Kumar <spnantha2409@gmail.com>
Re: [modeller_usage] (no subject) 2012/08/10
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] i am using windows 8 os 2012/08/10
- From: Nandha Kumar <spnantha2409@gmail.com>
Re: [modeller_usage] i am using windows 8 os 2012/08/10
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] how to download pdb_95.pir&bin file 2012/08/11
- From: Nandha Kumar <spnantha2409@gmail.com>
[modeller_usage] Fwd: how to download pdb_95.pir&bin file 2012/08/11
- From: Nandha Kumar <spnantha2409@gmail.com>
[modeller_usage] error message how to sol 2012/08/11
- From: Nandha Kumar <spnantha2409@gmail.com>
Re: [modeller_usage] Fwd: how to download pdb_95.pir&bin file 2012/08/11
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] error message how to sol 2012/08/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] sorry another one question 2012/08/11
- From: Nandha Kumar <spnantha2409@gmail.com>
[modeller_usage] regarding Dope score in optimize.py 2012/08/13
- From: NUTAN CHAUHAN <nutanbt@yahoo.co.in>
Re: [modeller_usage] regarding Dope score in optimize.py 2012/08/13
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Membrane environment 2012/08/13
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Modelling a heterodimeric structure using heterodimeric template 2012/08/17
- From: "Rakshambikai R" <raksha@mbu.iisc.ernet.in>
Re: [modeller_usage] Modelling a heterodimeric structure using heterodimeric template 2012/08/17
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeller9.10 using error on display 2012/08/24
- From: Nandha Kumar <spnantha2409@gmail.com>
[modeller_usage] GNUPLOT using the command please sent to email , how to use gnuplot 2012/08/30
- From: Nandha Kumar <spnantha2409@gmail.com>
[modeller_usage] Trouble with angle restrain in chimera 2012/09/03
- From: virginia miguel <virgimiguel@yahoo.com.ar>
Re: [modeller_usage] Trouble with angle restrain in chimera 2012/09/03
- From: João Rodrigues <anaryin@gmail.com>
[modeller_usage] minimize after filling the gaps 2012/09/04
- From: Mary Varughese <maryvj1985@gmail.com>
Re: [modeller_usage] Trouble with angle restrain in chimera 2012/09/04
- From: virginia miguel <virgimiguel@yahoo.com.ar>
Re: [modeller_usage] Trouble with angle restrain in chimera 2012/09/04
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] minimize after filling the gaps 2012/09/06
- From: Mary Varughese <maryvj1985@gmail.com>
[modeller_usage] Modeller 9.11 release 2012/09/06
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] A small query regarding modelling 2012/09/08
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] A small query regarding modelling 2012/09/08
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Regarding Modelling 2012/09/11
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Building in missing residues from a known structure 2012/09/12
- From: Joshua Adelman <jla65@pitt.edu>
Re: [modeller_usage] Building in missing residues from a known structure 2012/09/12
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Regarding Modelling 2012/09/12
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Building in missing residues from a known structure 2012/09/12
- From: Joshua Adelman <jla65@pitt.edu>
[modeller_usage] Regarding CASP9 Targets 2012/09/17
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] Modeling a missing loop without any template strand 2012/09/20
- From: Sajeewa Pemasinghe <sajeewasp@gmail.com>
Re: [modeller_usage] Modeling a missing loop without any template strand 2012/09/20
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] PIR file format 2012/09/21
- From: Nanda Pandey <pnanda1780@gmail.com>
Re: [modeller_usage] PIR file format 2012/09/21
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Fwd: PIR file format 2012/09/21
- From: Nanda Pandey <pnanda1780@gmail.com>
Re: [modeller_usage] Fwd: PIR file format 2012/09/21
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] sequence file produced is different from the one shown in the tutorial 2012/09/21
- From: Sajeewa Pemasinghe <sajeewasp@gmail.com>
Re: [modeller_usage] sequence file produced is different from the one shown in the tutorial 2012/09/21
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] meaning of "env.io.atom_files_directory" 2012/09/21
- From: Sajeewa Pemasinghe <sajeewasp@gmail.com>
Re: [modeller_usage] meaning of "env.io.atom_files_directory" 2012/09/22
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Reading in water residues 2012/09/23
- From: Sajeewa Pemasinghe <sajeewasp@gmail.com>
[modeller_usage] Reg :Error message: not able to open file 2012/09/24
- From: Nanda Pandey <pnanda1780@gmail.com>
[modeller_usage] mismatch in the alignment 2012/09/24
- From: Sajeewa Pemasinghe <sajeewasp@gmail.com>
Re: [modeller_usage] Reg :Error message: not able to open file 2012/09/25
- From: Nanda Pandey <pnanda1780@gmail.com>
Re: [modeller_usage] Reading in water residues 2012/09/25
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Reg :Error message: not able to open file 2012/09/25
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] mismatch in the alignment 2012/09/25
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeller 9.11 and Ubuntu 12.04 installation 2012/09/27
- From: Mike WA8BXN <hubby2k@hotmail.com>
Re: [modeller_usage] modeller 9.11 and Ubuntu 12.04 installation 2012/09/28
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] modeller 9.11 and Ubuntu 12.04 installation 2012/09/28
- From: Mike WA8BXN <hubby2k@hotmail.com>
[modeller_usage] Regarding the Modelling Utility 2012/09/28
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
Re: [modeller_usage] Regarding the Modelling Utility 2012/10/01
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] No atoms were read from the specified input PDB file 2012/10/10
- From: yael steuerman <yaelsteu@mail.tau.ac.il>
Re: [modeller_usage] No atoms were read from the specified input PDB file 2012/10/10
- From: Robert Campbell <robert.campbell@queensu.ca>
[modeller_usage] Make model containing alpha-helix in addition to template 2012/10/10
- From: Iain Aspley <IXA098@bham.ac.uk>
Re: [modeller_usage] Make model containing alpha-helix in addition to template 2012/10/10
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Protein-complex 2012/10/22
- From: Mehdi Talebzadeh Farooji <mahditzf@yahoo.com>
Re: [modeller_usage] Protein-complex 2012/10/22
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Force B-hairpin loop when modelling 2012/10/25
- From: Rienk Doetjes <DoetjesRS@cardiff.ac.uk>
Re: [modeller_usage] Force B-hairpin loop when modelling 2012/10/26
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Introduction of Zinc restraints 2012/11/02
- From: Mehdi Talebzadeh Farooji <mahditzf@yahoo.com>
Re: [modeller_usage] Introduction of Zinc restraints 2012/11/06
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Introduction of Zinc restraints 2012/11/06
- From: flavio seixas <oivalf_nix@yahoo.com>
[modeller_usage] multimeric model and loop refinement 2012/11/16
- From: sdimicco <sdimicco@unisa.it>
Re: [modeller_usage] multimeric model and loop refinement 2012/11/16
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] Modeller Help 2012/11/19
- From: mario rossi <sanzodenzel@yahoo.it>
Re: [modeller_usage] Modeller Help 2012/11/19
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] optimization protocol and HETATM flexibility 2012/11/20
- From: sdimicco <sdimicco@unisa.it>
[modeller_usage] Error while running compare.py 2012/11/20
- From: Anogna <anognal@gmail.com>
Re: [modeller_usage] optimization protocol and HETATM flexibility 2012/11/20
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Error while running compare.py 2012/11/20
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] (no subject) 2012/11/20
- From: Shota Nakamura <nshota@gen-info.osaka-u.ac.jp>
[modeller_usage] Regarding Salign Constructed Matrix 2012/11/20
- From: Ashish Runthala <ashishr@bits-pilani.ac.in>
[modeller_usage] scoring function and optimization 2012/11/21
- From: sdimicco <sdimicco@unisa.it>
[modeller_usage] scoring function and optimization 2012/11/26
- From: sdimicco <sdimicco@unisa.it>
[modeller_usage] loop refinement 2012/12/01
- From: Urszula Uciechowska <urszula.uciechowska@chem.umu.se>
Re: [modeller_usage] loop refinement 2012/12/01
- From: David Johnson <da.johnson.a@gmail.com>
[modeller_usage] Protein-ligand simulate annealing 2012/12/06
- From: flavio seixas <oivalf_nix@yahoo.com>
[modeller_usage] results analysis 2012/12/07
- From: sdimicco <sdimicco@unisa.it>
[modeller_usage] Is the DOPE score good for evaluating transmembrane proteins model-structures? 2012/12/07
- From: doranhen@post.tau.ac.il
[modeller_usage] mutate protion dimer 2012/12/07
- From: "Sangita Kachhap" <sangita@imtech.res.in>
[modeller_usage] Fwd: Modelling of Chimeric protein 2012/12/09
- From: James Starlight <jmsstarlight@gmail.com>
Re: [modeller_usage] Fwd: Modelling of Chimeric protein 2012/12/09
- From: flavio seixas <oivalf_nix@yahoo.com>
Re: [modeller_usage] Fwd: Modelling of Chimeric protein 2012/12/09
- From: flavio seixas <oivalf_nix@yahoo.com>
[modeller_usage] modeling with multiple sequence alignment. 2012/12/10
- From: Krupal Jethava <krupal.jethava@gmail.com>
Re: [modeller_usage] modeling with multiple sequence alignment. 2012/12/10
- From: flavio seixas <oivalf_nix@yahoo.com>
[modeller_usage] Fwd: modeling with multiple sequence alignment. 2012/12/10
- From: Krupal Jethava <krupal.jethava@gmail.com>
[modeller_usage] Fwd: modeling with multiple sequence alignment. 2012/12/10
- From: Krupal Jethava <krupal.jethava@gmail.com>
Re: [modeller_usage] Fwd: modeling with multiple sequence alignment. 2012/12/10
- From: flavio seixas <oivalf_nix@yahoo.com>
Re: [modeller_usage] Protein-ligand simulate annealing 2012/12/10
- From: flavio seixas <oivalf_nix@yahoo.com>
Re: [modeller_usage] Fwd: Modelling of Chimeric protein 2012/12/10
- From: flavio seixas <oivalf_nix@yahoo.com>
Re: [modeller_usage] Is the DOPE score good for evaluating transmembrane proteins model-structures? 2012/12/10
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Regarding Salign Constructed Matrix 2012/12/11
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] scoring function and optimization 2012/12/11
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] mutate protion dimer 2012/12/11
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Protein-ligand simulate annealing 2012/12/11
- From: Modeller Caretaker <modeller-care@salilab.org>
[modeller_usage] modeller on windows 7 2012/12/12
- From: Krupal Jethava <krupal.jethava@gmail.com>
[modeller_usage] (no subject) 2012/12/12
- From: mario rossi <sanzodenzel@yahoo.it>
Re: [modeller_usage] modeller on windows 7 2012/12/12
- From: Modeller Caretaker <modeller-care@salilab.org>
Re: [modeller_usage] Fwd: Modelling of Chimeric protein 2012/12/12
- From: flavio seixas <oivalf_nix@yahoo.com>

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