[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

[modeller_usage] error in Virutualbox



Hello:

  I am trying to run modeller with following scrips, but it said in terminal:

----log------------
EV/1% Traceback (most recent call last):
  File "model.py", line 6, in <module>
    j = job()
  File "/usr/lib64/python2.7/site-packages/modeller/parallel/job.py", line 24, in __init__
    self.host = socket.gethostbyname_ex(socket.gethostname())[-1][0]
socket.gaierror: [Errno -2] Name or service not known


----------scrips--------------------------------

from modeller import *
from modeller.automodel import *
from modeller.parallel import *

j = job()

j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())
j.append(local_slave())

env = environ(rand_seed=-6666, restyp_lib_file='$(LIB)/restyp.lib', copy=None) 
log.verbose()

# Give less weight to all soft-sphere restraints:
env.schedule_scale = physical.values(default=1.0, soft_sphere=0.7)
env.io.atom_files_directory = ['/usr/lib/modeller9.10/bin', '/media/sf_Documents/EPFL/02-modeller/EV/1']

# Read in HETATM records from template PDBs
env.io.hetatm = True

a = automodel(env, 
alnfile='test.ali',
              knowns=('MyA'), 
sequence='test',
a.starting_model = 1
a.ending_model = 200

a.use_parallel_job(j) 
a.make()