thank you very much for reply. but in the loop model protocol, it always use PDF for scoring. How can I use DOPE score for loop model assessment?
THX At 2012-03-03 02:23:03,"Modeller Caretaker" <> wrote: >On 3/2/12 9:59 AM, albert wrote: >> As far as we know the lower DOPE score, the better model. I am wondering >> how about the PDF score? also the lower score, the better model? eg: >> model A PDF=200 is better than model B PDF score=300. > >The molecular PDF is simply the sum of restraint violations. So the >lower the PDF, the less the restraints are violated. This typically >means a good model, assuming that the restraints are an accurate >description of reality (assessment scores such as DOPE are typically >more reliable). > > Ben Webb, Modeller Caretaker >-- > http://www.salilab.org/modeller/ >Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >_______________________________________________ >modeller_usage mailing list > >https://salilab.org/mailman/listinfo/modeller_usage