Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex
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Subject: Re: [modeller_usage] Loop Modeling in a Protein-DNA Complex
From: Alexander Predeus <>
Date: Fri, 16 Mar 2012 15:37:30 -0400
Thank you very much for your prompt response!
I have a small follow-up question. I was under the impression that refinement is essentially and MD simulation, and thus if I start two scripts, requesting to generate a 100 models in each, I would end up with 200 different models.
I was surprised to see that the scripts actually generate precisely the same series of models, and with same energies etc.
Why is that? Is there a way to run several parallel simulations and get independent sampling, or does it have to go consecutively?