On 3/23/12 10:57 PM, vishal Nemaysh wrote:
i have an amino acid sequence and the length is (1106 amino acid). so plz tell me how can i model the complete 3D structure of this much lengthy sequence.
Modeller has no maximum length; modeling a large protein is exactly the same as modeling a small protein. You might have to tweak automodel.max_ca_ca_distance if the protein is especially large though:
http://salilab.org/archives/modeller_usage/2011/msg00268.html Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage