Subject: Re: [modeller_usage] modelling with hetatms
From: "Offord, Victoria" <>
Date: Tue, 1 May 2012 21:25:15 +0000
Accept-language: en-GB, en-US
Cc: "" <>
Apparently, I was being a little daft and forgot I needed to use the full template sequence prior to the ligand! It seems to be working well now. Thanks for the replies, prompted me to look at it from scratch with fresh eyes which got it working :)
On 1 May 2012, at 10:13 PM, "Modeller Caretaker" <> wrote:
> On 04/26/2012 06:54 AM, Offord, Victoria wrote:
>> I have been trying to include some hetatms in my models but so far all
>> that seems to appear apart from the main chain is a few characters at
>> the end of the modelled sequence. I know that there must be something
>> obvious that I am doing wrong but cannot for the life of me work out
>> what it is!
>
> Your alignment file and Python script look fine to me. What happens when you run it?
>
> Ben Webb, Modeller Caretaker
> --
> http://www.salilab.org/modeller/
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