Thank you very much. One last question: how are the atoms (residues) chosen for individual CG step? For example if residue span range is 10, does it mean that only first residues are optimized?
> On 5/31/12 10:26 AM, M wrote:
> > I was asking about the Conjugate gradients optimization
> > initializations (each step of adding additional restraints), not
> > about the steps of one CG process.
>
> Before the schedule is used in comparative modeling, schedule steps with
> a range larger than the length of your sequence are removed, since they
> are redundant; see
> http://salilab.org/modeller/9.10/manual/node267.html
>
> Ben Webb, Modeller Caretaker
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> http://www.salilab.org/modeller/
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