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Re: [modeller_usage] A small query regarding modelling

On 9/8/12 9:59 AM, Ashish Runthala wrote:

I have a small query. For a considered well reliable template, is it
possible that i can also use the side chain information exactly the
same way from the template, i.e. MODELLER uses the complete backbone
and side-chain information for the aligned residues from the
considered template, and accordingly the MODELLER then predicts the
left over residues through the earlier considered reliable
scaffolds? Please guide me the same way.


You can simply select only the "left over" residues for refinement:
http://salilab.org/modeller/9.11/manual/node23.html

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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