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Re: [modeller_usage] Modeling a missing loop without any template strand
- To: Sajeewa Pemasinghe <sajeewasp AT gmail.com>
- Subject: Re: [modeller_usage] Modeling a missing loop without any template strand
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Thu, 20 Sep 2012 08:41:56 -0400
- Cc: modeller_usage@listsrv.ucsf.edu
On 9/20/12 3:19 AM, Sajeewa Pemasinghe wrote:
I am quite new to modeller (My first time posting). I have a pdb file in
which a loop (11 residues long) is missing. I DO NOT have a template
strand which contains these missing residues. Can I use modeller to
build these for me from scratch?
Sure. This is very similar to the example in the wiki:
http://salilab.org/modeller/wiki/Missing%20residues
Ben Webb, Modeller Caretaker
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