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Re: [modeller_usage] Modeling a missing loop without any template strand

On 9/20/12 3:19 AM, Sajeewa Pemasinghe wrote:

I am quite new to modeller (My first time posting). I have a pdb file in
which a loop (11 residues long) is missing. I DO NOT have a template
strand which contains these missing residues. Can I use modeller to
build these for me from scratch?


Sure. This is very similar to the example in the wiki:
http://salilab.org/modeller/wiki/Missing%20residues

	Ben Webb, Modeller Caretaker
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             http://www.salilab.org/modeller/
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