Dear,
I am trying to make model with Ligand (37 HetAtom) and 3 water molecule. I used the same script as in manual but getting the error that
"Number of residue in alignment and pdb are different: 324 288 for alignment entry: tseq.pdb"
In My alignment file:
1) query seq = 296 (residues)
2) pdb = 287 (residues) + 3 (water HETATM) + ligand (34 HETATM)
align-ligand.ali has
>P1;tseq.pdb
structureX:tseq.pdb:FIRST:@:END ::@:::
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA.....
................................*
>P1;qseq
sequence:qseq:FIRST:@:END ::@:::
AAAAAAAAAAA--AAAAAAAAAAAAAAAAAAA.....
................................*
I am using Modeller9v7 and python2.5.1
I will be very thankful for your help.