[modeller_usage] Minimize structure energy

Hi all,

I've only joined this mailing list lately, so pardon me if this  
question was asked and answered before.

We wish to perform energy minimization to a model we created. We were  
wondering whether we can use your automodel for that, via "use your  
own initial model":
http://www.salilab.org/modeller/manual/node26.html#SECTION:initialmodel

If it's possible, what should be the alignment file, since the  
sequence we want to use is the same as the model?

Thank you,
Dana.

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Dana Sachyani
Joel Hirsch's Lab
Faculty of Life Sciences
Tel Aviv University
Ramat Aviv, Israel
e-mail: