[modeller_usage] Mutate script crashing

Hi,

I am trying to mutate a residue on a protein. The residue IS contained in the sequence. Hence, am a little lost about the following error:

Traceback (most recent call last):
File "/Users/arjun/script/mutate_model.py", line 89, in <module>
    ali.append_model(mdl1, atom_files=modelname, align_codes=modelname)
File "/Library/modeller-9.11/modlib/modeller/alignment.py", line 110, in append_model
    atom_files, align_codes)
ValueError: mod_ali_412E> align code ( /Users/arjun/PDB/APOA1/mutated_models/2a01a.pdb) too long; length       47 is greater than max length       40

This is a sub structure of only the chain 'A' I saved from the original.

Regards

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The dream is not that you see in sleep , dream is which does not let you sleep. ~Dr. Abdul Kalam (Former President of Republic of India)

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Arjun Ray

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