Re: [modeller_usage] Denovo loop remodeling

[Ramin Ekhteiari <>]

Is there any rmsd-energy.py script in modeller to calculate the RMSD and energy of all generated pdb files with template.
Data Plot: Energy vs Rmsd?

Thanks
Cheers,

---

From: Modeller Caretaker <>
To: Ramin Ekhteiari <>
Cc: "" <>
Sent: Friday, June 28, 2013 6:15 PM
Subject: Re: [modeller_usage] Denovo loop remodeling

On 6/28/13 7:56 AM, Ramin Ekhteiari wrote:
> Is there any Denovo loop remodeling on the base of the fragment data
> base in MODELLER?

Modeller uses a statistical potential for de novo loop modeling, not a
fragment database.

    Ben Webb, Modeller Caretaker
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