[modeller_usage] automodel/Mymodel

Hi,

I want to ask a base question,

please let me know the main deference between these two python scripts.

I suppose the deference is *this*:

the first one do the comparative modeling with the base of template for all residues,

but the second one, do the same except for residues 197 - 198.

But I see a main deference between the results (output structures)

are the applied methods of these two script are the same or not?

Cheers

Ramin

env = environ()
a = automodel(env, alnfile='Drd2-3SN6.ali',
knowns='3SN6', sequence='Drd2',
assess_methods=(assess.DOPE, assess.GA341))
a.starting_model = 1000
a.ending_model = 1000
a.make()

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class MyModel(automodel):
    def select_atoms(self):
return selection(self) - selection(self.residue_range('197', '198'))
env = environ()
a = MyModel(env,
            alnfile = 'Drd2-3SN6.ali',
            knowns   = '3SN6',
            sequence = 'Drd2',
            assess_methods=(assess.DOPE, assess.GA341))
a.starting_model= 1005
a.ending_model = 1005
a.make()

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