[modeller_usage] Make non-adjacent mutations, preserve backbone and avoid clashes
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Subject: [modeller_usage] Make non-adjacent mutations, preserve backbone and avoid clashes
From: David Johnson <>
Date: Tue, 30 Jul 2013 12:30:26 -0400
I would like to make a handful of mutations that are not necessarily in
sequential order in the primary structure. I would like to preserve the
backbone of the model and to keep fixed all side-chains except those of
the mutations and possibly nearby residues, which are to be moved ONLY
if necessary to void steric clashes.
Thus far I have tried
Selecting all but the mutated atoms and setting
env.edat.nonbonded_sel_atoms = 2