On 09/15/2013 02:57 PM, HIDDEN wrote:
if I switched the order of the templates to be 3, 1, 2 instead of the order shown above (1,2,3), I get different models with different DOPE scores. Is this possible or am I doing something wrong?
Sure, that will happen, since the restraints will be slightly different. The models should still be selected from the same ensemble though (so if you build multiple models, any differences should average out). Don't waste time trying to find an "optimal order" for the templates.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage