The new version of Modeller, 9.13, is now available for download! Please
see the download page at http://salilab.org/modeller/ for more information.
If you have a license key for Modeller 8 or 9, there is no need to
reregister for Modeller 9.13 - the same license key will work. (It won't
do any harm to reregister if you want to, though!)
9.13 is primarily a bugfix release relative to the last public release
(9.12). Major user-visible changes include:
# Modeller now includes a variety of SOAP (statistically optimized
atomic potential) scores for assessing proteins, loops, and
interfaces.
# The Lennard-Jones interaction energy is now artificially truncated at
very short distance; this makes simulations with poor starting
conditions much less likely to 'blow up'.
# model.get_insertions(), model.get_deletions() and model.loops() now
have an include_termini option; if False, residue ranges that include
chain termini are excluded from the output.
See the Modeller manual for a full change log:
http://salilab.org/modeller/9.13/manual/node39.html
If you encounter bugs in Modeller 9.13, please see
http://salilab.org/modeller/9.13/manual/node10.html for information on
how to report them.
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