Re: [modeller_usage] Generate PDB using diheral angles
To: Harinder Singh <>,
Subject: Re: [modeller_usage] Generate PDB using diheral angles
From: Modeller Caretaker <>
Date: Mon, 28 Apr 2014 16:15:14 -0700
On 4/27/14, 9:07 PM, Harinder Singh wrote:
Currently i am using the tleap in amber tools to generate a PDB using
only dihedral angles. Is it possible to generate a PDB/Model using only
dihedral angles and the sequence, just like amber tools.
No. Modeller is designed to build comparative models, and works in
Cartesian space, not internal coordinates. You could certainly add
restraints on individual dihedral angles and then optimize, but it
wouldn't be the most efficient way to generate such a model.