Subject: Re: [modeller_usage] Reading density files
From: Modeller Caretaker <>
Date: Fri, 06 Jun 2014 09:04:31 -0700
On 6/6/14, 7:53 AM, wrote:
m = modeller.density(modeller.environ(), "file.mrc", 10)
The constructor takes keyword arguments, not positional args (this makes
for more readable code anyway). Plus it generally makes sense to keep
the environ object around. So what you want here is
e = modeller.environ()
m = modeller.density(e, file="file.mrc", resolution=10,
em_density_format='MRC')
Note you need to specify the file format, otherwise it defaults to
XPLOR, and obviously an MRC file isn't valid XPLOR format ;)