On 2/4/15 8:35 AM, Edelmiro Moman wrote:
Great!
But can I insert that directly within the selection like this?
class MyModel(automodel):
def select_atoms(self):
return selection(self.get_insertions(aln, minlength=1,
maxlength=30, extension=0, include_termini=True))
Yes - although you'll need to read the alignment first. There's a method read_alignment() which returns it. (Note that this is basically what the default loopmodel.select_loop_atoms() method does, except that it includes deletions too.)
Ben Webb, Modeller Caretaker
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