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Re: [modeller_usage] Problem with structure-structure alignment with salign

On 6/15/15 3:18 AM, Pawel Kedzierski wrote:

How to reliably calculate the minimum RMSD (and superposition) between
CA carbons, based on sequence alignment?
If you don't want to change the existing alignment, there is only one way to it in Modeller - use selection.superpose(). The alignment routines (salign, malign3d) will modify the alignment. 

	Ben Webb, Modeller Caretaker
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