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Re: [modeller_usage] Error using local_alignment=True in salign

On 11/06/2015 01:38 AM, David Abia wrote:

I'm trying to force a local alignment while using salign function in
mod9.15, and it fails with error:

"modeller.ModellerError: align_l_251E> MATRIX_OFFSET probably has an
invalid value:        0.0000"
When doing local alignments, you need to set the matrix offset appropriately (the salign function has a matrix_offset parameter). It may take some experimentation to find a suitable value for your system. 

	Ben Webb, Modeller Caretaker
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             https://salilab.org/modeller/
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