On 3/19/17 5:34 PM, Eugene Radchenko wrote:
I have a problem trying to use external alignment (from Clustal Omega, converted to PIR format).
Clustal ignores whitespace in the alignment file, but Modeller doesn't. Remove it.
Ben Webb, Modeller Caretaker -- https://salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage