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Re: [modeller_usage] Missing residues in PDB file

On 07/11/2017 02:26 AM, Szymon Żaczek wrote:
I would like to perform a research on 4za7 protein. As long as using
Modeller to insert missing residues is rather straightforward, the
issue I have encountered is more related to PDB file itself. In the
remark 465 section in the original pdb file, there are listed several
missing residues:
The problem is that I lack the knowledge on how to deal with those
residues: 499A, 499B, 499C.

What's the complication? Modeller doesn't care how the PDB residues are numbered - just treat these in exactly the same way as any other missing residue. The output model is always numbered sequentially starting at 1.

	Ben Webb, Modeller Caretaker
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage