On 07/11/2017 02:26 AM, Szymon Żaczek wrote:
I would like to perform a research on 4za7 protein. As long as using Modeller to insert missing residues is rather straightforward, the issue I have encountered is more related to PDB file itself. In the remark 465 section in the original pdb file, there are listed several missing residues:
...
The problem is that I lack the knowledge on how to deal with those residues: 499A, 499B, 499C.
What's the complication? Modeller doesn't care how the PDB residues are numbered - just treat these in exactly the same way as any other missing residue. The output model is always numbered sequentially starting at 1.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org https://salilab.org/modeller/ Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage