Subject: Re: [modeller_usage] Missing residues in PDB file
From: Modeller Caretaker <>
Date: Tue, 11 Jul 2017 11:29:06 -0700
On 07/11/2017 02:26 AM, Szymon Żaczek wrote:
I would like to perform a research on 4za7 protein. As long as using
Modeller to insert missing residues is rather straightforward, the
issue I have encountered is more related to PDB file itself. In the
remark 465 section in the original pdb file, there are listed several
The problem is that I lack the knowledge on how to deal with those
residues: 499A, 499B, 499C.
What's the complication? Modeller doesn't care how the PDB residues are
numbered - just treat these in exactly the same way as any other missing
residue. The output model is always numbered sequentially starting at 1.